Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops6g00237 | ATGAACAACACTTTCAATTCTTCTGATGACAACCCTTCAGAGGAGCTACAAGGATATGCATATTACTCAGTTGGGTTTTCTCTTGGGCTTCTTCTAGTGATCACTATCATAACTCTTATTTCTCATGGCTGTAGGCATAGAAGGTTGCAAAACAGGCAAGTAAGTGCCGCTGCCAACACCAACATGGAGCTAAATTCTGCCTTAACTATCCAGGTTCATCAACAAGAAGCCATAGTGAACAGTTATCCAGTGCTATTGTATTCCCTAGCCAAGCAACATAAGCCAGATCCAGCAACAATAACATCTTGCTGCTCAATATGTTTGGCAGATTACAAGGACACAGACTTGTTGAAACTTTTACCTGATTGTGGTCACATGTTTCATAGAGACTGCATTGATATGTGGTTGCATGTAAACCTCTCATGTCCTTTGTGTCGAACCTCGCCACTCCCAACTCCTCTTTCAACTCCTCTTGCCGAAGTTACTCCCTTGACAACAAGACATGATTAA | 510 | 0.4196 | MNNTFNSSDDNPSEELQGYAYYSVGFSLGLLLVITIITLISHGCRHRRLQNRQVSAAANTNMELNSALTIQVHQQEAIVNSYPVLLYSLAKQHKPDPATITSCCSICLADYKDTDLLKLLPDCGHMFHRDCIDMWLHVNLSCPLCRTSPLPTPLSTPLAEVTPLTTRHD* | 170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops6g00237 | 169 | ProSiteProfiles | Zinc finger RING-type profile. | 104 | 146 | IPR001841 | - | |
| Rops6g00237 | 169 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 150 | IPR013083 | - | |
| Rops6g00237 | 169 | Pfam | Ring finger domain | 104 | 146 | IPR001841 | - | |
| Rops6g00237 | 169 | SUPERFAMILY | RING/U-box | 103 | 151 | - | - | |
| Rops6g00237 | 169 | CDD | RING-H2_EL5-like | 103 | 146 | - | - | |
| Rops6g00237 | 169 | SMART | ring_2 | 104 | 145 | IPR001841 | - | |
| Rops6g00237 | 169 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 160 | IPR045899 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops6g00237 | Rops-Chr6 | 5745670 | 5746179 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops6g00237 | 13 | 167 | C3H Transcription Factor Family | AT5G06490 | 35.028 | 3.55e-35 | 120 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops6g00237 | - | - | gmx:102670414 | 220.32 |