LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g00232	ATGGGGTTGACAAACCTGGGGCCATTTGGGTCTTTTATTAAAGAAGGATGGGAAAAAGCATTCTCTGTTGCAAAGTTATTCTGTTTTCTACATGTTACCAACACCTACCTCATCACCCCTGTTCAGACATTTGGCCCTAGCATGCTTCCTGCAATTGATTTGACAGCAAATGTGTTTTTAGCTGAAAGGATCTCTACCCAATTTGGTAAAGTTGCTCATGGAGATATTGTAGTCTTGCGCTCACCTCAAAATCCTAGAAAGTTTATCACCAAACGCTTGGTTGGACTGGAGGGTGATAGTGTTACATACAGTGGTCCTGAGAACAGTGATAAGCATGAGAATGTTTTGGTTCCAAAGGGTCACGTTTGGGTACAGGGAGATAACATGTATAATACCAACGACTCAAGAAATTTTGGTCCTGTTCCTTATGGCCTTATTGAGAGCAGGATATTCTGGAGGGTTTCGCCACTTAAAGATTTTGGACCTTTCTGGAAAAAATGA	501	0.4152	MGLTNLGPFGSFIKEGWEKAFSVAKLFCFLHVTNTYLITPVQTFGPSMLPAIDLTANVFLAERISTQFGKVAHGDIVVLRSPQNPRKFITKRLVGLEGDSVTYSGPENSDKHENVLVPKGHVWVQGDNMYNTNDSRNFGPVPYGLIESRIFWRVSPLKDFGPFWKK*	167

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g00232	166	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	10	163	-	-
	Rops6g00232	166	Pfam	Signal peptidase, peptidase S26	23	105	IPR019533	GO:0004252\|GO:0006465
	Rops6g00232	166	Pfam	Signal peptidase, peptidase S26	113	151	IPR019533	GO:0004252\|GO:0006465
	Rops6g00232	166	FunFam	Inner membrane protease subunit 1	34	162	-	-
	Rops6g00232	166	CDD	S26_SPase_I	40	150	IPR019533	GO:0004252\|GO:0006465
	Rops6g00232	166	Gene3D	Umud Fragment, subunit A	33	165	-	-
	Rops6g00232	166	SUPERFAMILY	LexA/Signal peptidase	35	163	IPR036286	-
	Rops6g00232	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	36	52	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Rops6g00232	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	89	101	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Rops6g00232	166	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	117	136	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g00232	Rops-Chr6	5674747	5676258	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g00232	48	163	MADS-box Gene Family	AT1G29960	52.991	6.80e-42	134

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g00232	K09647		-	gmx:100526949	217.624