Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00223 ATGACGCCACTTTTTCCTTCCCCTTCTTCAGGAAAAATAAGTACATCAATGATTGTAGCAATTGTTGTCCCAATTGTTATTTTGGTGGCGCTTTTGGTTCTAGGCTGCTGTTTCTGGCAAAGAAGGCGAAACAAAAACCAAGATGCGGTCCAGGAACTGAATGATAGCACTAGGAGTTATTTTACATTTGAAGAAGAGTCTTTGCGTTTTGACTTGGCTACCATTGAAGCTGCCACAAATAGGTTCTCGAATGAAAATAAGATAGGTGAAGGTGGATTTGGTGTGGTTTATAAGGGTACCCTTCCTAATGGACAAGAGATTGCTGTGAAGAGGCTATCAAAAAGATCCTTGCAGGGTGACGTAGAATTCAGCAACGAGGCTGCGCTTGTTGCACAGCTTCATCATATAAATTTGGTTAGGCTTTTAGGATTTTGCTTGGAGGGAACAGAGAGGATACTTGTTTATGAATTCATCCCAAATTCAAGCCTTGATCACTTCATATTTGATCATGAGAAACAAAGAGAGATAGATTGGGCAAGACGCTACAAAATTATAGCTGGGATTGCTCGAGGAATTCAATATCTCCATGAAGATTCTAGGCTAAGAATAATACATCGCGATCTCAAGGCTAGTAACGTTCTATTAGATGCTAATATGATTCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTCCACGGAGATCAAAGTGAAGTAAATACAAGAACAGGAAGGATAGTTGGAACTTACGGTTACATGTCTCCTGAATATGCAATGCATGGAAAATTCTCTGTGAAATCGGATGTGTTCAGCTTTGGAGTCTTAGTTTTAGAGATCATAAGTGGCAAGAAGAACACAAGTTATTATCAATCACATCATGAGGAAGACCTATTGAGCCTTGCTTGGAAAAATTGGACGAATCAAACACCTTTCCTGATGTTGGATCCAAAATTGAGAGGTTCTCATTCTAGAAACGAAGTTAAGAGATGCATCCATATTGCTTTATTATGCGTTCAGGAAAATCCAGGTGAAAGACCTTCAATGGCGACTGTAGTACTTGCGTTGAACAGTTATTCAGTAACTTTAGCATTCCCTCGACAGCCAGCATCTTTGCTGCGAGGAAGAACAACACCAGACAGATTAAGACACCAGCTCGATTCTGATCAGTCTACCAGCTCTACAATCCCATTGTCCATGAATGATTCTTTAATTACTGAAATATATCCCAGATAA 1233 0.3958 MTPLFPSPSSGKISTSMIVAIVVPIVILVALLVLGCCFWQRRRNKNQDAVQELNDSTRSYFTFEEESLRFDLATIEAATNRFSNENKIGEGGFGVVYKGTLPNGQEIAVKRLSKRSLQGDVEFSNEAALVAQLHHINLVRLLGFCLEGTERILVYEFIPNSSLDHFIFDHEKQREIDWARRYKIIAGIARGIQYLHEDSRLRIIHRDLKASNVLLDANMIPKISDFGMAKIFHGDQSEVNTRTGRIVGTYGYMSPEYAMHGKFSVKSDVFSFGVLVLEIISGKKNTSYYQSHHEEDLLSLAWKNWTNQTPFLMLDPKLRGSHSRNEVKRCIHIALLCVQENPGERPSMATVVLALNSYSVTLAFPRQPASLLRGRTTPDRLRHQLDSDQSTSSTIPLSMNDSLITEIYPR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00223 410 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 406 - -
Rops6g00223 410 CDD STKc_IRAK 88 352 - -
Rops6g00223 410 ProSiteProfiles Protein kinase domain profile. 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00223 410 Gene3D Transferase(Phosphotransferase) domain 1 158 363 - -
Rops6g00223 410 FunFam Cysteine-rich receptor-like protein kinase 10 40 157 - -
Rops6g00223 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Rops6g00223 410 FunFam cysteine-rich receptor-like protein kinase 10 158 362 - -
Rops6g00223 410 Gene3D Phosphorylase Kinase; domain 1 42 157 - -
Rops6g00223 410 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Rops6g00223 410 Pfam Protein tyrosine and serine/threonine kinase 84 353 IPR001245 GO:0004672|GO:0006468
Rops6g00223 410 SUPERFAMILY Protein kinase-like (PK-like) 66 385 IPR011009 -
Rops6g00223 410 SMART serkin_6 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00223 410 MobiDBLite consensus disorder prediction 373 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00223 Rops-Chr6 5447254 5450985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00223 11 410 Receptor kinase-like Gene Family AT4G05200 56.716 8.48e-156 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g00223 PK_Tyr_Ser-Thr 4.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00223 - - ccaj:109806163 635.18