Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00216 ATGTCTCATTTTCATCAACAACACAATGATGGGAATCCCAACAACAAATCAACGAGGTCGCACCCTCAAACATCTTCTGCCAATTCGTGGAGTCTTTTCCAAGATCGAGCCTTTGAGCGAGCCCTTGTGATCTACCCAGATAGCATAGAAGAGCGGTGGGAGAAAGTTGCCGCTCATGTCCCTGGTCGATCGCCCTTAGAGGTTAAGGAACACTATGAGGCTTTGTTACATGACGTGTTATTAATTGAGTCAGGTCAAGTCGAGTTGCCAAGGTACAAAGATGAATTAAAGCTAAAATCAACGGTGGAGGATCATGATTCAACCCAAGTTCATAGTCAGTCACCAACCGAGGTTCAGGAACACTATCAAGCATCGTTCCATGATGTGTCACTAATTGAGTCAAGTCAAGTTGACCTGTCAAGATACACAGATGAACCAATGTTAGAGACAACAGTAGGTCAAGTGGATTTGTCGAGCCATATAGATGAACCAATGGCAAATACAGCAGTGGAGGATGATAATTCAACAAAGTCCACTCCTTCTGTTCGGAGGAGGAAAGGGGTGGCTTGGACTGAAGAGGAACACAGGTTATTTCTTGTTGGACTCCAGAGATATGGCAAGGGAGATTGGAAAAGCATTTCAAGATATGTTGTCACTACAAGAAATCCTTCTCAAGTAGCTAGCCATGCTCAGAAATATTTCATTCGTCAACGTGCACAAACGAAACAAAGGAAAAGAACAAGCATCCATGACATAACATTAACCAACAGTGATTCGGTCTCTCACCTCATCGACCAGCAGAACTGTGTTCCTCCTGTAGATTTTCAAATGCCACAATTACAAGAAATGCAGCAAACCCAAGAAGTACTCCAGTCGAGTTCATCAAACAATAACAATGTATTTTATTCAACTATGTATAAGTCCTTTGACTAG 933 0.4244 MSHFHQQHNDGNPNNKSTRSHPQTSSANSWSLFQDRAFERALVIYPDSIEERWEKVAAHVPGRSPLEVKEHYEALLHDVLLIESGQVELPRYKDELKLKSTVEDHDSTQVHSQSPTEVQEHYQASFHDVSLIESSQVDLSRYTDEPMLETTVGQVDLSSHIDEPMANTAVEDDNSTKSTPSVRRRKGVAWTEEEHRLFLVGLQRYGKGDWKSISRYVVTTRNPSQVASHAQKYFIRQRAQTKQRKRTSIHDITLTNSDSVSHLIDQQNCVPPVDFQMPQLQEMQQTQEVLQSSSSNNNNVFYSTMYKSFD* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00216 310 ProSiteProfiles Myb-like domain profile. 28 76 IPR001005 -
Rops6g00216 310 MobiDBLite consensus disorder prediction 166 185 - -
Rops6g00216 310 Gene3D - 188 239 - -
Rops6g00216 310 SUPERFAMILY Homeodomain-like 28 85 IPR009057 -
Rops6g00216 310 CDD SANT 189 234 IPR001005 -
Rops6g00216 310 FunFam transcription factor MYB1R1 188 239 - -
Rops6g00216 310 SUPERFAMILY Homeodomain-like 183 238 IPR009057 -
Rops6g00216 310 Gene3D - 22 89 - -
Rops6g00216 310 Pfam Myb-like DNA-binding domain 189 234 IPR001005 -
Rops6g00216 310 FunFam Transcription factor SRM1 22 89 - -
Rops6g00216 310 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 99 IPR043363 -
Rops6g00216 310 CDD SANT 29 76 IPR001005 -
Rops6g00216 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 186 237 IPR006447 GO:0003677
Rops6g00216 310 ProSiteProfiles SANT domain profile. 190 238 IPR017884 -
Rops6g00216 310 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g00216 310 ProSiteProfiles Myb-like domain profile. 190 234 IPR001005 -
Rops6g00216 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 238 IPR017930 -
Rops6g00216 310 SMART sant 26 78 IPR001005 -
Rops6g00216 310 SMART sant 186 236 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00216 Rops-Chr6 5208339 5209787 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g00216 Myb_DNA-binding 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00216 - - mof:131165253 180.644