Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00214 ATGTTTTCTTTTCATCAACAACACAATGATGAGAATCCCAACAGAAAATCAAGTAGATCACACCCTCAATCCTGTTCTACTAAGTTGACTCCGTGGTCTCAATTCCAAGATAAAGCCTTCGAGCTAGCCCTCGCGATCTACCCAGATAGCATGGTAGATCGATGGGAGAAAGTTGCCACTCACGTTCCTGGTCGGTCTCCAAACGAGGTTAAGGAACACTATCAAACATTGCTAAATGATGTGTTACTAATTGAGTCAGGTCAAGTCAAATTGCCAAGGTACATGGATGAATTCATGCCAATGGTAGCACTGGAAGATGATGATTCAACTGAGATTCCTAGTTGGTTGCCAACGGAGGTTAAGGGACATTGTCAGACATCCCTCCCTAACATTTCACTAATTGAGTCAGGTCCAGTTGAGTTGTCGAAAAACATGGATGAATCAATGCCAAAGGCAGCAGTGGAGGATGATGATTCCACAAAGTTCACTCCTCCTGTTCAGAGGAGAAAATGGGTGACTTGGACTGAAGATGAACACAGGTTATTTCTTGTTGGACTCCAGAAATATGGCAAGGGAGATTGGAAAAGCATTTCAAGATATGTCGTCACAACAAGAACTCCAAGTCAGGTTGCAAGCCATGCCCAGAAATACTTTCTTCGCAAACGTGACCCAACAAAAAAGAGTAAAAGAAGAAGCATTCATGACACAACCCTAACAGATAATGATTTGGTCCCTCACCTCATTGATAAGCAGAACTGGGATCCTCCTGTTGATGTTCAAATGCAACAATCACAAGAATGGCAGCAAGCCCAAGAATTGCTCCAGATGAACCCATCAAACAACAACAATGTATTTTATTCAACTGATTTGGTCTCTCACCTCATTGACCAATGGAACTGGGTTCCTCCTGTAGATGTTCAAACGCAACAATCACAAGAATTGCAGCAAGCCCAAGAAATGCTTCACTTGAGCTCATCAAACAATAACAGTGTATTTTATTCTACTGTGTTTGAGTCTCTCTTTGACTAG 1029 0.4208 MFSFHQQHNDENPNRKSSRSHPQSCSTKLTPWSQFQDKAFELALAIYPDSMVDRWEKVATHVPGRSPNEVKEHYQTLLNDVLLIESGQVKLPRYMDEFMPMVALEDDDSTEIPSWLPTEVKGHCQTSLPNISLIESGPVELSKNMDESMPKAAVEDDDSTKFTPPVQRRKWVTWTEDEHRLFLVGLQKYGKGDWKSISRYVVTTRTPSQVASHAQKYFLRKRDPTKKSKRRSIHDTTLTDNDLVPHLIDKQNWDPPVDVQMQQSQEWQQAQELLQMNPSNNNNVFYSTDLVSHLIDQWNWVPPVDVQTQQSQELQQAQEMLHLSSSNNNSVFYSTVFESLFD* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00214 342 CDD SANT 173 218 IPR001005 -
Rops6g00214 342 SUPERFAMILY Homeodomain-like 167 222 IPR009057 -
Rops6g00214 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 82 IPR017930 -
Rops6g00214 342 ProSiteProfiles Myb-like domain profile. 174 218 IPR001005 -
Rops6g00214 342 Pfam Myb-like DNA-binding domain 173 218 IPR001005 -
Rops6g00214 342 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Rops6g00214 342 SMART sant 28 80 IPR001005 -
Rops6g00214 342 SMART sant 170 220 IPR001005 -
Rops6g00214 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 222 IPR017930 -
Rops6g00214 342 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 30 285 IPR043363 -
Rops6g00214 342 CDD SANT 31 78 IPR001005 -
Rops6g00214 342 MobiDBLite consensus disorder prediction 1 29 - -
Rops6g00214 342 ProSiteProfiles Myb-like domain profile. 31 78 IPR001005 -
Rops6g00214 342 FunFam transcription factor MYB1R1 172 223 - -
Rops6g00214 342 FunFam Transcription factor SRM1 24 91 - -
Rops6g00214 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 221 IPR006447 GO:0003677
Rops6g00214 342 Gene3D - 171 222 - -
Rops6g00214 342 SUPERFAMILY Homeodomain-like 31 86 IPR009057 -
Rops6g00214 342 ProSiteProfiles SANT domain profile. 174 222 IPR017884 -
Rops6g00214 342 Gene3D - 24 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00214 Rops-Chr6 5191685 5193086 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g00214 Myb_DNA-binding 6.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00214 - - twl:120006132 197.208