Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00196 ATGGCTCTGGAACTTGTTGCTGGACCTTTAATGGGAGCTGTTTTCAATGTGTTACTTGAAAGGATAGCTTCTACTGAGGTTGTCAATTTCTTCAAGAAGAAAAATTGTGACAAGTTGCTCAAAAGGTTGAAGATCATCTTGTTGTCAGTCCATGCTGTGCTCAATGATGCGGAAGAAAAGCAAATGAAAAATGAAGCAGTGAAGGAGTGGCTTGAGGAACTTAAAGATGTGACCTTTGATGCTGATGATCTACTTGATGAGATCTATACTGGTGAAAAAATCAAGGGAAAAGAGGTAAACATACTCCACTCCATTTCTATGAATGTTTATGATAAAGAGCTTGTACAGAAAATAGAAGATGTTCAAGAAAGATTAGAATTTATTATAAAACAGAAGGAAGTACTTGATCTGAAAGTGGGTAAGGAAGTCAAAATGGCACACAAGACACCAACCTCATCTGTGATAGAAGCAAGTGATGTGTATGGAAGGGACAATGATAAAGAAATCTTAGTTAACTTGCTATTGACACATGATGCTGATGATGAAAAAATAGGAGTCATTCCCATTGTTGGTATGAGTGGGATTGGGAAAACCACCTTAGCTCAACTAGTATACAATGATCATAGGGTACAGAAGGAATTTGATCTCAAAGCCTGGATTTATGTCTCTGAAGACTTTGATATCTGCAAGATTACAAAAAACCTTTTGGAGGTTGTCACATCATGTAGTTGTGATATTGAAGATTTAAATTCACTCCAGAGGAATCTGAAATCCTTTATACAGAAGAAAAAGTTTTTATTTGTGCTGGATGATGTTTGGAACGAAAATTATGATAACTGGGACAAATTCAGGAGTCCATTTAAACATGCAGGAGCTCATGGAAGTAAGATTATTGTAACCACCCGAAGTGGGTATGTTGCATCCATCATGCAAACTATTCCACCTTATAATCTCAATGAATTGTCCAATGAAGATTGTTGGGATTTGTTTTCAAAGCATGCGTTTGATTATAGGGATTCAAATGTCCATCAATGTGTAGACAAAGTTGGAAGAGAAATAGTTAGAAAGTGTAAAGGATTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGAGGTCAAAAAGTGATAAGCAAGAATGGTATAAAGTATTGAACAGTGAGATATGGGACCTGCGAGATCATGAGAGTAACATTCTTCCAGCTTTGAGATTAAGTTACCATTATCTCCCTTCCCATTTAAAGAGGTGTTTTGCTTATTGTGCAATTTTCCCAAAAGATTGTGAATTTGAAAAGGAGAACCTGATTTTGTTGTGGATGGCAGAAGGTTTGCTCCAACAACAATCAAAGAGACATAGAAGAATTGAAGAAGTTGGAAATGAGTATTTTTGTGAATTAGTATCCAGATCATTTTTCCAGCAATCAAGGCGTGGCAAGTCATGTTTCCTAATGCATCATCTTATAAATGACTTGGCTCAATTTGTATCTGGAAAATTTTCTGTTAGAATGGAAGGTAACAACTCTGATGAAGTTGAAGAAAGAACTCGTCATTTGTCCCACATTATTGTAGATAGTTCCTCATATGTGAACCTGAAAGATGTTAGCAAAGCAAATCGCCTACACACCTTTCTGCAAATAAGGACAATAGGTACATCCATTGACTTGTTCAACAACATGCCAAATGATCTGTTGACAAAGTTAAGGTACTTAAGGGTGTTATCTTTGGTAGGTGCATATTTCTTCAGTTTACCATATTCAATAGGTGAACTAAAACATCTGCGCTATCTAGAAGTGTCTGACACTCAGATTATCAGGTTACCTGAATCCATCTGCAGCTTGTACAATTTACAAACTCTGAAGCTAGTTGGATGTTATAATCTTATTGAATTGCCAAAAGATATGCATAAACTTGCCAACCTGCGCTACTTGGATATCAGAGACACTTGTTTGAAGTGGATGCCATTGCAAATCAGCAAATTAAAAAACCTCCAAAAGTTGAGTGACTTTTTTGTGGGAAAAGATTATGGATCTTCCATTGGTGAACTGGGAGAGCTATCTGATTTGCATGGCACATTATTCATTCATTACATAGAACATATTGTTAATTGTAAGGATTCTGAGAAGGCAAAAATGAAGGAAAAGCATGGCATTGAAAAGTTGTCTTTGGATTGGGGGAGGAGTGGTGATACTGATAACTCTCAGCATGAAAAAGCCATACTGGACAGCCTGCAACCACATACTAATTTGAAGGAGCTTGATATCTATGACTACACAGGCACAGAATTTCCAGATTGGTTGGGGGATTACTCCTTTTGCAACTTGGTGTCCTTACAGCTTAAGGGCTGTAAATATTGCTGTAAATTGCCTCCACTTGGACAACTTCCAATGCTGAAAGAGCTTCAGATTATTAAATTTGAAGGATTGGTGAGTGTGGGATCTGAGTTTTATGGAAATAGAACTTCTTTAACTGATAGCTTTCCTGCACTAGAAATTCTAAGGATTGAGTCTATGTCAGCATGGGAAAAATGGTTTTCTGATGCTGACAATGCAGGCAGCAGAGCTTTCTGTCATCTTAGAGAGTTTTACATTGAAAGCTGTCCCAAACTGACAGGGAACTTACCAAGTAACCTTCCATCTTTGACATTACTTGTAATCCGAGATTGCACACATCTGCTTTGTTCACTTCCCGAAGCTCCAGCTCTGCGTGTGCTGAACATTCAGAATTGTGAGAAGCTAGAATTCCCAGTACATGCACCATGGTACCACCAATCACTGACATCTTTGTACTTACATGATAGCTGTGACTCACTCATGTTCTTGCCTTTAGATCTCTTCCCTAACCTCAAGTCTCTAGATATTTGGGGATGTAAAAATCTGGAAGCACTTACTGTTTCAGCATCAGATGCAACTCCTCCAAATATCAAATCCCTTCATTCCTTGCGCATAAGGCATTGTCCAAATTTCATATCATTTCCCATGGGAGGATTTGCAGCCCCAAAACTCACTTTATTAACCATCAACTACTGTGAGAAGTTGAATTCTCTGCCTGAAAGAATGCATGACCTTATGCCAAGTTTGAAAGAACTTCAACTGTGGGGTTGTCCTCAAATTCAGTCATCTACCATGAGGCCACTAAGGATTCGGATTTGCAACAAACTCATGGATGGGAAACAAAACCACTCTGATCCTCTCTTTGCAAGTTTGAAGGGTCTGGCCTCTATTCATAGTCCCTCATCAAGTTAG 3240 0.3824 MALELVAGPLMGAVFNVLLERIASTEVVNFFKKKNCDKLLKRLKIILLSVHAVLNDAEEKQMKNEAVKEWLEELKDVTFDADDLLDEIYTGEKIKGKEVNILHSISMNVYDKELVQKIEDVQERLEFIIKQKEVLDLKVGKEVKMAHKTPTSSVIEASDVYGRDNDKEILVNLLLTHDADDEKIGVIPIVGMSGIGKTTLAQLVYNDHRVQKEFDLKAWIYVSEDFDICKITKNLLEVVTSCSCDIEDLNSLQRNLKSFIQKKKFLFVLDDVWNENYDNWDKFRSPFKHAGAHGSKIIVTTRSGYVASIMQTIPPYNLNELSNEDCWDLFSKHAFDYRDSNVHQCVDKVGREIVRKCKGLPLAVKTLAGLLRSKSDKQEWYKVLNSEIWDLRDHESNILPALRLSYHYLPSHLKRCFAYCAIFPKDCEFEKENLILLWMAEGLLQQQSKRHRRIEEVGNEYFCELVSRSFFQQSRRGKSCFLMHHLINDLAQFVSGKFSVRMEGNNSDEVEERTRHLSHIIVDSSSYVNLKDVSKANRLHTFLQIRTIGTSIDLFNNMPNDLLTKLRYLRVLSLVGAYFFSLPYSIGELKHLRYLEVSDTQIIRLPESICSLYNLQTLKLVGCYNLIELPKDMHKLANLRYLDIRDTCLKWMPLQISKLKNLQKLSDFFVGKDYGSSIGELGELSDLHGTLFIHYIEHIVNCKDSEKAKMKEKHGIEKLSLDWGRSGDTDNSQHEKAILDSLQPHTNLKELDIYDYTGTEFPDWLGDYSFCNLVSLQLKGCKYCCKLPPLGQLPMLKELQIIKFEGLVSVGSEFYGNRTSLTDSFPALEILRIESMSAWEKWFSDADNAGSRAFCHLREFYIESCPKLTGNLPSNLPSLTLLVIRDCTHLLCSLPEAPALRVLNIQNCEKLEFPVHAPWYHQSLTSLYLHDSCDSLMFLPLDLFPNLKSLDIWGCKNLEALTVSASDATPPNIKSLHSLRIRHCPNFISFPMGGFAAPKLTLLTINYCEKLNSLPERMHDLMPSLKELQLWGCPQIQSSTMRPLRIRICNKLMDGKQNHSDPLFASLKGLASIHSPSSS* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00196 1079 Gene3D Ribonuclease Inhibitor 968 1054 IPR032675 -
Rops6g00196 1079 Gene3D Ribonuclease Inhibitor 870 967 IPR032675 -
Rops6g00196 1079 SUPERFAMILY L domain-like 483 890 - -
Rops6g00196 1079 FunFam Probable disease resistance protein At1g61300 143 314 - -
Rops6g00196 1079 FunFam Probable disease resistance protein At1g63360 406 493 - -
Rops6g00196 1079 Pfam NB-ARC domain 179 386 IPR002182 GO:0043531
Rops6g00196 1079 PANTHER DISEASE RESISTANCE PROTEIN RP 40 958 IPR044974 GO:0006952
Rops6g00196 1079 PRINTS Disease resistance protein signature 942 958 - -
Rops6g00196 1079 PRINTS Disease resistance protein signature 357 371 - -
Rops6g00196 1079 PRINTS Disease resistance protein signature 259 273 - -
Rops6g00196 1079 PRINTS Disease resistance protein signature 186 201 - -
Rops6g00196 1079 Pfam Rx N-terminal domain 11 90 IPR041118 -
Rops6g00196 1079 SUPERFAMILY RNI-like 844 1038 - -
Rops6g00196 1079 Coils Coil 118 138 - -
Rops6g00196 1079 Gene3D - 320 404 IPR042197 -
Rops6g00196 1079 Gene3D Ribonuclease Inhibitor 525 845 IPR032675 -
Rops6g00196 1079 Gene3D - 405 493 IPR036388 -
Rops6g00196 1079 Gene3D - 141 313 IPR027417 -
Rops6g00196 1079 Gene3D - 13 124 - -
Rops6g00196 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 420 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00196 Rops-Chr6 4568766 4572407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00196 184 645 WRKY Transcription Factor Family AT5G45050 23.494 1.02e-08 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00196 - - vum:124831962 1745.33