LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g00195	ATGGACATGGACATGGACATTCCCCTTCCCGAAGAGCTTGAATTGCTTGAATCCAATTCTGACCTCTACGAACCAGATCATCATGATCCACACTATTTCTTACCAGATTTCGACGAACCTGAACTGGAACCTCAACAACCGCCGCCACCAGATCTCGCGATTCCTTCCGAACCTCAAACCAACGTCCACAAGCGTTCTCGTTCGGATTTGCATTGTTCCGATGAGGAGAAAAGCGATAAAGTTAGGGTTAGGGTTGAGGATTCCCATTCCGATGAGGACTGGCTTCGGTACTCTCCTCCTCCTCCGGTTGCAGCCGAGGAAGAAGCGAGGTTTGTGAAGGAGAAGATGTTGTCGCGGTATGTGTCAGAGATTGACGGTGAGTGTATGCCGGTCACCTCGCCCAACGGGGATAGGGTTTATGCGAAGCTGGATCGGTTCTCAGGAGAGGAGCGAGTGACGAAGCTAGATTGCAGAGAATATTCTGCTGATCTCGGTGTAGAACCAATTAATATTCTGTTTGAAAGGTTGGAGCAAGAGGCTTTCACTAAGGCCTTGGAAGCTAGTTCCGAATGCCAAAGTGTTCTAGATGTTCCTGAAACAGAAGTGGTCCATGAGCAACTTTGGGTAGATAGATATGCTCCGAAATCATTTACTGAGCTTCTTAGTGATGAACAGACAAATCGTGAGGTACTATTGTGGTTGAAACAATGGGATTCTACTGTGTTTGGATCAGAAATTCGAAGTACATCAGATGACGTTTTGTCTGCTTTGAAACGACATTCTTCTGTTGCCCACAATCAGAAACCTTTGGTTTCAAAGTTTCCAATGAAAAACAGAGAACCTAAATGGAGTAGTAGGAGGGATATGAATTCTAGAAGTATGGACGAGAGTGGTGATTCAAAGAGCATTCAGGATATATGGAATACAAAATCAAGGAATATTGGTCCACCAGAACAGAAGATCCTTCTGCTCTGTGGACCACCGGGTCTTGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGTGGATATCATGTGGTGGAGGTTAATGCTAGTGATGATCGCTCTGCATCAACAATTGAAGCAAAAATCCTTGATGTGGTACAGATGAACTCTGTCTTGTCTGATTCAAGGCCAAAGTGTCTGGTAGTGGATGAAATTGATGGAGCTCTTGGCGATGGCAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCTGATGCAGGGAAGCAAAGTTTGGGCAAAGGACAATCGGAAAGGAAGTCATCAAAGAAGGGGCGGAAAACAGCATCACTGTCAAGACCTGTGATTTGCATATGTAATGACCTCTATGCACCTGCCTTGAGACCATTACGTCAGGTGGCCAAGGTTCATATATTTGTTCAACCAACAATTAGTCGTGTGGTAAGCAGATTGAAATATATATGTAACAAGGAGGGGATGAAAGCCAATGCCATTGCACTCACTGCTCTAGCAGAATATACAGAATGTGATATACGCTCATGCTTGAACACTCTCCAATTTCTCTCCAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGTTCTCAAGTAGTTGGCCAGAAGGACATGTCAAAGAATGTTCTAGACATCTGGAAAGAGTTTTTCCAAAGGAAAAGAACAAAAAAGATGGAAAGAAAATCTCACAGAAGCAACTCCTTTGAATTTGACTCCTTGTACTCCCTTATATCAAATCGTGGTGATAGTGACTTAATTATGGATGGAATTCATGAAAACATTTTGCAGCTCAATTATCATGACCCAGTGATGCAGAAAACTGTCAAATGCATCAATAGTCTTGGAGTTTATGATCTAATGCATCAACATATAATGCGTACACAACAAATGCCCCTTCTTGTTTATTTGCCCCCCATAGCAATTACTGTACATCATATAGTAGCTCAAGTTCAGAAACCAAACATTGAGTGGCCAAAGTCATATCAAAGGTATCGAACAATGATGATGGAAAAGATGGACATTTTGAATTCTTGGCACTACAAAATTCCTCCACATATTGCGAGGCACTTATCAGCTTGTTCCTTTGTTGAAGACTTAATTTCCCCATTATTACATATTCTGTCCCCACCAACTATAAGACCGGTGGCCTTACAACTACTATCGGAAAAGGAGAAGAATGATCTTGCTCAATTAGTTAGCACAATGGTCTCGTACACTATAACATATAAGACCATGAAATCAGATACGCTGCCTCATACCCTGAAGTATGAAGTAGCAGATGACTTTGCTCTGTCTCTTGTCCCCCCTATAAGTGACTTTATAAACTTTAAGGATTATACTTCAAATCATTATGTGCTTTCTTTAGCTATGAAGCAGGTTTTGGTGCATGAAGTTGAAAAGCACAAGATTCTACGTGTTAATATTGACAAAACTGTGGCTTTAGCAAATGGAGGGCATGAAGTTATTGAGGCTCGAACTAACAATTTCCCATTAACCAATACCAATCATGCAGCTGCAGTTGTTATGAAAACCATTGAAAATCAGGCTAATGTTTTAGCAAGGCAATTAAATGCAAACCCCACAACAGTTTCACCAAACTTGAATCCAGAAAAAAGTGCAAATGCAACAGACAATACGAAACTGCTAAACATGGGAAATAGAAAAAAACCACCCGTTAGTTCTTCAAGTTTCTTTGACAGGTTTAAAAAGTTAAATGTTAAGGGTCTCCAGAATAATGATAGATCTCTACAGAAAGAAGCTACCTTGGAGAAAGATCGATACCCTTTACTTTTTAAATTTAATGAGGGTTTTACGAATGCAGTCAAAAGGCCTGTTCGTATTCGAGAATTTCTATCTTAA	2856	0.4114	MDMDMDIPLPEELELLESNSDLYEPDHHDPHYFLPDFDEPELEPQQPPPPDLAIPSEPQTNVHKRSRSDLHCSDEEKSDKVRVRVEDSHSDEDWLRYSPPPPVAAEEEARFVKEKMLSRYVSEIDGECMPVTSPNGDRVYAKLDRFSGEERVTKLDCREYSADLGVEPINILFERLEQEAFTKALEASSECQSVLDVPETEVVHEQLWVDRYAPKSFTELLSDEQTNREVLLWLKQWDSTVFGSEIRSTSDDVLSALKRHSSVAHNQKPLVSKFPMKNREPKWSSRRDMNSRSMDESGDSKSIQDIWNTKSRNIGPPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSASTIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISAERKPDAGKQSLGKGQSERKSSKKGRKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTISRVVSRLKYICNKEGMKANAIALTALAEYTECDIRSCLNTLQFLSKKKETLNAFDIGSQVVGQKDMSKNVLDIWKEFFQRKRTKKMERKSHRSNSFEFDSLYSLISNRGDSDLIMDGIHENILQLNYHDPVMQKTVKCINSLGVYDLMHQHIMRTQQMPLLVYLPPIAITVHHIVAQVQKPNIEWPKSYQRYRTMMMEKMDILNSWHYKIPPHIARHLSACSFVEDLISPLLHILSPPTIRPVALQLLSEKEKNDLAQLVSTMVSYTITYKTMKSDTLPHTLKYEVADDFALSLVPPISDFINFKDYTSNHYVLSLAMKQVLVHEVEKHKILRVNIDKTVALANGGHEVIEARTNNFPLTNTNHAAAVVMKTIENQANVLARQLNANPTTVSPNLNPEKSANATDNTKLLNMGNRKKPPVSSSSFFDRFKKLNVKGLQNNDRSLQKEATLEKDRYPLLFKFNEGFTNAVKRPVRIREFLS*	952

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	1	101	-	-
	Rops6g00195	951	Gene3D	-	205	467	IPR027417	-
	Rops6g00195	951	SMART	AAA_5	318	472	IPR003593	GO:0016887
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	41	55	-	-
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	20	38	-	-
	Rops6g00195	951	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	206	523	IPR027417	-
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	859	894	-	-
	Rops6g00195	951	Gene3D	-	469	539	-	-
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	279	299	-	-
	Rops6g00195	951	CDD	AAA	317	407	-	-
	Rops6g00195	951	CDD	HLD_clamp_RFC	469	527	-	-
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	859	892	-	-
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	413	434	-	-
	Rops6g00195	951	FunFam	Chromosome transmission fidelity protein 18	469	536	-	-
	Rops6g00195	951	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	3	950	-	-
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	62	94	-	-
	Rops6g00195	951	Pfam	ATPase family associated with various cellular activities (AAA)	322	447	IPR003959	GO:0005524\|GO:0016887
	Rops6g00195	951	MobiDBLite	consensus disorder prediction	277	302	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g00195	319	516	Core DNA Replication Machinery Family	AT5G22010	31.455	8.46e-15	77.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g00195	K11269		-	gmx:100785041	1469.52

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops6g00195	6	4528507	4560147	Rops6g00195	6	4528507	4560147	ECH