Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00177 ATGCTGAATGATATATCTTTTCTGCAGGTCTTTCTGACCCCTACTCATTTAGCTATTGTCTTGGAGTATGCCTCTGGTGGTGAACTCTTTGAGAGAATATGCACCGCTGGCCGATTTAGTGAAGATGAGGCAAGATATTTCTTCCAACAGCTTATATCTGGGGTTAGCTACTGTCATTCAATGGTCTTGAGTATTAAGATGTCTGGGAATATCAAGGAGGGGAGAGCTTTGGCAAAAGGGTATTATGGTATTTTATTGCTATTGACTTTACTTCTTTGTAGCAGCACAGAGGGGTTGAATAAAGAGGGGCAAATCCTTCTAGAGCTTAAGAATGGACTTGATAAATTTAATCTTTTGGGAAATTGGAAGTCTACTGATGAAATCCCATGTGGATGGATAGGTGTGAATTGCAGTTATGGATTTAGTAGTAATGATAATCCAGTGGTTGTGTCTCTTAATTTGAGTTCCATGGGTCTTAATGGAACTCTTAATGCTAGCATTGGGGGTCTGACCCATCTAACTTATCTCAATCTTGCTTACAATGATCTGACTGGAAATATCCCCAAGGAGATCGGTGATTGCTCGAGTTTGGAGACTCTTTATTTGAACAATAATCAATTTGAGGGGCGAATTCCTGCTGAATTGGGTAAGCTGTCTGTTTTGAGAAATTTGAATATCTGCAACAACAAACTCCATGGTGTTCTTCCAGATGAGATTGGAAACTTGTCTTCTTTGGTTGAGTTAGTGGCGTATAGCAACTTTCTCATTGGCCCCCTGCCTAATTCCCTTGGAAATCTTCAGAATCTCATAACTTTCAGAGCTGGGGCAAATAACATTACTGGTAGCTTGCCAAAGGAAATTAGCAGATGTAAGAAGTTGGTACGTCTTGGTCTTGCTCAAAATCTGATAGATGGGGAGCTACCAAGTGAGATCGGGATGCTTGACAGCTTAAAAGAACTGATTTTATGGGAAAACAGGTTGTCAGGAACTATTCCTAAAGAGCTTGGGAATTGTAGCAGTCTTGAGACCCTTGCTTTATATGGGAATAATCTTGTTGGACCTATACCTCAGGAGATTGGGAACATCAAATCATTGAGATGGTTGTATCTTTACAGAAATAAGTTAAATGGGACCATTCCAAGGGAAATTGGAAATCTTTCTTTAGCTTTAGACATTGATTTCTCAGAGAACTCATTGGTAGGTGATATTCCTTCGGAGATCAGCAAAATAAGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCAGCTAACTGGTGTTATACCAAATGAGTTTAGTAGCTTGAGGAACTTGTCGAAGCTGGACCTGTCAATGAATCATCTTACAGGTCCAATTCCACTTGGCTTCCAATATTTGACTAAAATGTATCAGTTGCAACTTTTTGACAACTCCCTAAGTGGTACTATTCCTCAGGGACTTGGACTTCACAGTCCTCTTTGGGTGGTTGATTTTTCTGACAACAAGTTGACAGGAAGAATACCTCCTCATCTATGCCGAAATTCTTGCTTGATGTTGTTGAATCTGGCTGCTAATCAGCTTGATGGAAATATACCAACAGGGATATTGAACTGTGAATCATTGGCACAGTTGCTTTTGGTTGGAAACAGGCTTACTGGTGGCTTCCCTGTAGAATTGTGTAAACTGGAGAACCTTACTGCCATTGATTTGAATGAGAACAGGTTCAGTGGTCCACTTCCTTCTGAGATTGCAAACTGCCACATGTTGCAAAGGCTTCATATTGCAAACAATTACTTCATATTGGAGTTGCCTAAGGAAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCAAATCTTTTCACTGGAAAAATCCCACCTGAAATATTTTGGTGCCAAAGGCTCCAGCGGCTTGATCTCAGTCAGAATAGCTTTACTGGTTCCTTGCCAAATGAGCTTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAGACAACAAGCTTTCTGGAAATATTCCTGCAGCATTAGGTAATCTGTCTCATTTGAACTGGTTGCTGATGGATGGCAATTTGTTTTATGGTGAAATACCTCCTCAGTTGGGTTCTCTTTCAAGCTTACAGATTGCAATGGATCTCAGTTACAATAATCTTTCGGGAAAAATACCATCTCAGCTTGGCAATCTCAATATGCTCGAATATCTCTTTCTCAATAACAACCATTTGGATGGTGAAATTCCCGGCACCTTTAGTGAGCTTTCAAGCTTGCTGGGGTGTAATTTCTCATACAATAACCTCTCTGGACCTATCCCTTCCACTAAAATTTTCCAAAATATGGCTGTGAGCAGCTTTATTGGTGGTAACGAAGGCCTTTGTGGTGCACCTCTCGGTGACTGCAACACCAATCCAGCTTCTCGCTCTGATCCTCCAGGGAAAGGTGCTGAGTCTCGTCGAGCTAAAATTGTCATGATCATTGCATCTGTTGTTGGTGGTGTTTCTCTCATTTTAATTTTAGTTATTTTGTATTTTATGAGACATCCTAGGGAGTCTGTTGATTCCTTTGGAGACACTGAGAATCCCTCCCCGGATTCAGATATCTATTTCCCTCCAAAGGAAGAATTCACATTTCAAGATCTACTTGATGCTACAAAAAGATTTCATGAAAGTTATGTTATTGGCAGCGGAGCATGTGGAACAGTTTATAAGGCAGTAATCAAATCTGGTAGGACCCTTGCTGTTAAGAAGTTAGCATCTAACAGGGAGGGGAACAACATTGAGAATAGTTTCAGGGCTGAAATTTTGACTCTGGGAAGGATAAGGCATCGAAATATAGTGAAGTTGTATGGTTTTTGCTATCACCAGGGTTCCAACCTGCTACTTTATGAGTACATGGAAAGGGGTAGCTTAGGTGAATTATTGCATGGTTCTGCAAATAATTTGGAATGGCCGACTCGGTTCATGATTGCTCTTGGAGCTGCTGAGGGTCTTACCTACTTGCATCACGACTGCAAACCAAAGATCATTCACCGTGACATAAAATCTAATAATATTCTACTTGATGAAAATTTTGAGGCCCATGTTGGTGATTTTGGCTTGGCAAAAGTGATTGACATGCCCCAGTCAAAATCGATGTCTGCAGTTGCTGGATCTTATGGATATATTGCTCCTGAATATGCATATACCATGAAGGTCACAGAAAAGTGTGACATATATAGTTATGGGGTTGTGCTCTTGGAATTGCTAACTGGAAGAACCCCAGTTCAACCATTGGAGCAAGGAGGTGACCTTGTCACATGGGTGAGAAACCATATCCGGGATCATAACAATACATTGACATCAGAGATACTTGATAGTCGTTTGGATCTTGAAGATCAAATCACCATGAATCACATGCTCACTGTTTTGAAAATTGCTTTATTGTGCACAAGTATGTCTCCTTCTAAGAGGCCATCAATGCGGGAAGTTGTGTTGATGCTCATTGAGTCCAATGAGAGAGAAGGAAACTTAACACTCACTCAAACATATCATGATCTTCCTTCCAAAGAGGACATATGA 3537 0.4054 MLNDISFLQVFLTPTHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMVLSIKMSGNIKEGRALAKGYYGILLLLTLLLCSSTEGLNKEGQILLELKNGLDKFNLLGNWKSTDEIPCGWIGVNCSYGFSSNDNPVVVSLNLSSMGLNGTLNASIGGLTHLTYLNLAYNDLTGNIPKEIGDCSSLETLYLNNNQFEGRIPAELGKLSVLRNLNICNNKLHGVLPDEIGNLSSLVELVAYSNFLIGPLPNSLGNLQNLITFRAGANNITGSLPKEISRCKKLVRLGLAQNLIDGELPSEIGMLDSLKELILWENRLSGTIPKELGNCSSLETLALYGNNLVGPIPQEIGNIKSLRWLYLYRNKLNGTIPREIGNLSLALDIDFSENSLVGDIPSEISKISGLSLLFLFENQLTGVIPNEFSSLRNLSKLDLSMNHLTGPIPLGFQYLTKMYQLQLFDNSLSGTIPQGLGLHSPLWVVDFSDNKLTGRIPPHLCRNSCLMLLNLAANQLDGNIPTGILNCESLAQLLLVGNRLTGGFPVELCKLENLTAIDLNENRFSGPLPSEIANCHMLQRLHIANNYFILELPKEIGNLSQLVTFNVSSNLFTGKIPPEIFWCQRLQRLDLSQNSFTGSLPNELGTLQHLEILKLSDNKLSGNIPAALGNLSHLNWLLMDGNLFYGEIPPQLGSLSSLQIAMDLSYNNLSGKIPSQLGNLNMLEYLFLNNNHLDGEIPGTFSELSSLLGCNFSYNNLSGPIPSTKIFQNMAVSSFIGGNEGLCGAPLGDCNTNPASRSDPPGKGAESRRAKIVMIIASVVGGVSLILILVILYFMRHPRESVDSFGDTENPSPDSDIYFPPKEEFTFQDLLDATKRFHESYVIGSGACGTVYKAVIKSGRTLAVKKLASNREGNNIENSFRAEILTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSANNLEWPTRFMIALGAAEGLTYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLEQGGDLVTWVRNHIRDHNNTLTSEILDSRLDLEDQITMNHMLTVLKIALLCTSMSPSKRPSMREVVLMLIESNEREGNLTLTQTYHDLPSKEDI* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00177 1178 Gene3D Phosphorylase Kinase; domain 1 850 957 - -
Rops6g00177 1178 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 847 957 - -
Rops6g00177 1178 Pfam Protein kinase domain 881 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00177 1178 Pfam Protein kinase domain 5 61 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00177 1178 Pfam Leucine rich repeat N-terminal domain 100 138 IPR013210 -
Rops6g00177 1178 Gene3D Transferase(Phosphotransferase) domain 1 958 1171 - -
Rops6g00177 1178 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 552 1154 - -
Rops6g00177 1178 SUPERFAMILY Protein kinase-like (PK-like) 5 61 IPR011009 -
Rops6g00177 1178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Rops6g00177 1178 Pfam Leucine rich repeat 316 375 IPR001611 GO:0005515
Rops6g00177 1178 Pfam Leucine rich repeat 150 207 IPR001611 GO:0005515
Rops6g00177 1178 SUPERFAMILY Protein kinase-like (PK-like) 856 1153 IPR011009 -
Rops6g00177 1178 SUPERFAMILY RNI-like 391 767 - -
Rops6g00177 1178 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 958 1170 - -
Rops6g00177 1178 Gene3D Transferase(Phosphotransferase) domain 1 3 64 - -
Rops6g00177 1178 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 98 259 - -
Rops6g00177 1178 Gene3D Ribonuclease Inhibitor 98 250 IPR032675 -
Rops6g00177 1178 Gene3D Ribonuclease Inhibitor 356 459 IPR032675 -
Rops6g00177 1178 Gene3D Ribonuclease Inhibitor 251 355 IPR032675 -
Rops6g00177 1178 SMART LRR_typ_2 170 194 IPR003591 -
Rops6g00177 1178 SMART LRR_typ_2 650 674 IPR003591 -
Rops6g00177 1178 SMART LRR_typ_2 314 338 IPR003591 -
Rops6g00177 1178 SMART LRR_typ_2 602 626 IPR003591 -
Rops6g00177 1178 SMART LRR_typ_2 362 386 IPR003591 -
Rops6g00177 1178 SMART LRR_typ_2 434 457 IPR003591 -
Rops6g00177 1178 SMART LRR_typ_2 554 578 IPR003591 -
Rops6g00177 1178 SMART LRR_typ_2 723 746 IPR003591 -
Rops6g00177 1178 SMART LRR_typ_2 218 242 IPR003591 -
Rops6g00177 1178 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 482 797 - -
Rops6g00177 1178 Gene3D Ribonuclease Inhibitor 480 797 IPR032675 -
Rops6g00177 1178 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 354 458 - -
Rops6g00177 1178 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 260 353 - -
Rops6g00177 1178 Pfam Leucine Rich Repeat 628 648 IPR001611 GO:0005515
Rops6g00177 1178 ProSiteProfiles Protein kinase domain profile. 880 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00177 1178 SUPERFAMILY L domain-like 115 397 - -
Rops6g00177 1178 SMART serkin_6 880 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00177 Rops-Chr6 4172629 4194408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00177 99 1155 Receptor kinase-like Gene Family AT5G56040 38.162 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops6g00177 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00177 - - gmx:100805792 1840.47