Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00176 ATGAAAAAAGACAGAGGATGGGCCTTCCCTAATCCCCTACACGTGCCTCCCCATCTCTCGTTCTCTCAGTCCCTCAACTTTCTTCTGGGGTTTCATCTCTCTCTTAGCTGCTGTAAACTCTTGTCTCAACAAGTACACAACGTGGGGATGGAGGCCCTTGGTTCTGTGGATGACCTCTTGGATTTCTCATCAGACATAGGTGAGGAAGATGATGATGACGACAAACCTAGGAAAGCTTTTTCTTCACTTAACCCAAAATGCAGTGATCCACTATCGTTTAACCCATTGGACTTGGGTGATCCTGGCCATTCATTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGACGCATTTCCTGCTGTTGAAACATTTGTTGACTTACCATCTATTCAACCTGATTTATCAAAGCACCAAAGGACAGCCCCAATGCTCGAGTACAGCACAAGCAGTAGCAACAGTAATAACAGCACCAACAGCATTACCCTCTTAAATGGCTATGATAACTTGAAGGTCCCTGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCTTCGCCCTGGCATTGCTGACATCTCTGGCCAGCAATCGTGGTGGAAACAGCCAAGTAACAAAATTTCCAAAGAAGAAGTGAAAGAAACCACATCCATTGGGAGGAAGTGTCATCACTGTGGAGCTGAAAAAACTCCACAGTGGCGGGCTGGTCCCCTTGGACCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCCGGGCGGCTTGTGCCTGAATACCGGCCTGCAAGTAGCCCAACTTTTCGTAGTGATTCACATTCTAATTCCCACAGGAAGATAATGGAGATGAGGAGGCAGAAGCAAATGGGAATGGTTTGA 882 0.4671 MKKDRGWAFPNPLHVPPHLSFSQSLNFLLGFHLSLSCCKLLSQQVHNVGMEALGSVDDLLDFSSDIGEEDDDDDKPRKAFSSLNPKCSDPLSFNPLDLGDPGHSFSEFAEEELEWLSNKDAFPAVETFVDLPSIQPDLSKHQRTAPMLEYSTSSSNSNNSTNSITLLNGYDNLKVPVRARSKSRSRLRPGIADISGQQSWWKQPSNKISKEEVKETTSIGRKCHHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSDSHSNSHRKIMEMRRQKQMGMV* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00176 293 CDD ZnF_GATA 222 270 IPR000679 GO:0006355|GO:0043565
Rops6g00176 293 Pfam GATA zinc finger 223 256 IPR000679 GO:0006355|GO:0043565
Rops6g00176 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 280 - -
Rops6g00176 293 Gene3D - 218 289 IPR013088 GO:0006355|GO:0008270
Rops6g00176 293 FunFam GATA transcription factor 212 293 - -
Rops6g00176 293 SMART GATA_3 217 267 IPR000679 GO:0006355|GO:0043565
Rops6g00176 293 PANTHER GATA TRANSCRIPTION FACTOR 47 289 - -
Rops6g00176 293 ProSitePatterns GATA-type zinc finger domain. 223 248 IPR000679 GO:0006355|GO:0043565
Rops6g00176 293 ProSiteProfiles GATA-type zinc finger domain profile. 217 253 IPR000679 GO:0006355|GO:0043565
Rops6g00176 293 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00176 Rops-Chr6 4160630 4166290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00176 50 291 C2C2-Gata Transcription Factor Family AT3G24050 42.238 1.04e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops6g00176 GATA 1.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00176 - - lja:Lj0g3v0273489.1 361.688