Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00161 ATGCATAACATTTGTCTCAATATACCACCAATGGTTCAAAGCTTCGACCCTGAGGATCTTTTCACTCGTAGATGCATTTGGGTGAATGGACCTGTCATAGTTGGTGCTGGTCCTTCAGGTCTTGCAGTTGCTGCTGGTCTCAAAGACCAAGGTGTTCCTTTCTTCATTCTTGAAAGAGCTAACTGCATTGCCTCTCTTTGGCAAAACCGCACTTATGATCGTTTGAAGCTTCATCTTCCTAAACAATTCTGTCAGTTACCCAATTTTCCATTCCCTGAGGACTTTCCTGAGTACCCCACAAAATTTCAGTTCATAAAGTACCTTGAATCTTATGCTAAGCACTTTAATATATCCCCACAGTTCAATGAAACAGTGCAATCTGCTAAGTATGATGAAACCTTTGGTTTGTGGAGGGTTAAAACCATTAGGAAAAACACCAGTGAAGTTGAGTATATTTGCAGGTGGCTTGTGGTTGCTACTGGTGAAAATTCAGAGAAAGTTGTGCCTGAGTTTGAAGGTTTGGAAGAATTTGGTGGCCATGTTATGCATGCTTGTGACTATAAATCTGGGGAGAGTTTTAGTGGTCAGAGAGTACTAGTTGTTGGGTGTGGAAATTCAGGCATGGAAGTATCTCTTGATCTTTGTAATCACAATGCAAAGCCATCAATGGTGGTTAGAAGCTCGGTTCATGTGTTGCCAAGAGAATTTTTTGGAAAATCAACTTTTGAACTTGCAGTTATGTTGATGAAAAGATTCCCCCTTTGGATGGTTGATAAGATATTGCTGATTCTGGCTCGTTTGGTTCTTGGGAATGTTGAAAAATATGGTCTTAAAAGGCCACCTTTAGGCCCTTTAGAGTTTAAGAACACTGCAGGGAAGACACCTGTGTTGGACATTGGAGCACTTGAGAAAATTAGATCTGGTCAAATCAAAGTGGTTCCAGGAATCAGAAGATTCTCACCAGGGAAAGTGGAACTTGATGATGGCAAAGTTCTTCCCATTGATTCTGTTGTTCTTGCTACTGGGTATCGCAGCAATGTACCATCATGGCTGAAGGAGAATGACTTCTTTTCCAATGATGGGATCCCAAAAGATCCATTTCCAAATGGATGGAAAGGAAATGCTGGTCTTTATGCTGTTGGATTCACAAGGAGAGGCCTTTCTGGTGCATCTTTGGATGCAATTAGTGTGTCTCATGATATTGCCAAGAGTTGGAAAGAGGAAACTAAACAGAAAAAGAAAACAGTGGCTGCACGCCATAGGAGATGCATATCACACTTTTAA 1284 0.4112 MHNICLNIPPMVQSFDPEDLFTRRCIWVNGPVIVGAGPSGLAVAAGLKDQGVPFFILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPEYPTKFQFIKYLESYAKHFNISPQFNETVQSAKYDETFGLWRVKTIRKNTSEVEYICRWLVVATGENSEKVVPEFEGLEEFGGHVMHACDYKSGESFSGQRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREFFGKSTFELAVMLMKRFPLWMVDKILLILARLVLGNVEKYGLKRPPLGPLEFKNTAGKTPVLDIGALEKIRSGQIKVVPGIRRFSPGKVELDDGKVLPIDSVVLATGYRSNVPSWLKENDFFSNDGIPKDPFPNGWKGNAGLYAVGFTRRGLSGASLDAISVSHDIAKSWKEETKQKKKTVAARHRRCISHF* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00161 427 Gene3D - 31 411 IPR036188 -
Rops6g00161 427 PRINTS FAD-dependent pyridine nucleotide reductase signature 31 50 - -
Rops6g00161 427 PRINTS FAD-dependent pyridine nucleotide reductase signature 197 215 - -
Rops6g00161 427 PRINTS FAD-dependent pyridine nucleotide reductase signature 153 171 - -
Rops6g00161 427 SUPERFAMILY FAD/NAD(P)-binding domain 196 381 IPR036188 -
Rops6g00161 427 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 32 419 - -
Rops6g00161 427 SUPERFAMILY FAD/NAD(P)-binding domain 32 233 IPR036188 -
Rops6g00161 427 Pfam Flavin-binding monooxygenase-like 33 348 IPR020946 GO:0004499|GO:0050660|GO:0050661
Rops6g00161 427 FunFam Flavin-containing monooxygenase 31 410 - -
Rops6g00161 427 PRINTS Pyridine nucleotide disulphide reductase class-II signature 30 52 - -
Rops6g00161 427 PRINTS Pyridine nucleotide disulphide reductase class-II signature 193 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00161 Rops-Chr6 3977593 3979587 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00161 K11816 - gmx:100818345 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00161 6 3977593 3979587 Rops6g00161 6 3977593 3979587 ECH
Rops8g03179 8 69876690 69878397 Rops6g00161 6 3977593 3979587 PCT