Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00137 ATGTATTGGGGTGGAGTGATGGCTGGCCATATGGCTAGGGGTGTCATAGAGGAAGAGGTTTGGAGGAAGGGACCATGGACTGCTGAAGAGGACAGGTTGCTAATTGAGTATGTGAGATTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAAAGAAATGGTAAGAGCTGCAGATTAAGATGGGTGAATTATCTGAGACCAGACCTGAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTACTGGAGGACCCATTTCAAGAAAAAGGCAAAAAGTCCTTCTGATGCTGCAGAAAAGGCTAAAAGTAGAATCCTGAGGAAGCAGCTATTTCACCAGCAACAACAGCAACAGTTGCAGCAGCAGCATCAGCATCAGCAAGTGCAACAGCTACCACAACAACAACTCCAATTCAACATGGACATGAAAGGGATCATGGCCTTGTTTGAGGACAACAATCATAGAGTGCCTTATATATCTCAAGGGAGACAAGAAATGATCAACATGTGCCAAAACACCACAGAAGAGCAAGGATACTTCATGCTCAATGGCAACAACACCTCTGCAGTGGAGGCCCCAGCTGAAGAAATTTTGTGGGATGGACTGTGGAACTTGGATGATATTCATGGCAATTTCAGTGTAGCTAATGCAACAAACAAAGCTAGTCTTTACAATTTAGTTGCTCCTTTCTGTTAA 798 0.4436 MYWGGVMAGHMARGVIEEEVWRKGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKAKSRILRKQLFHQQQQQQLQQQHQHQQVQQLPQQQLQFNMDMKGIMALFEDNNHRVPYISQGRQEMINMCQNTTEEQGYFMLNGNNTSAVEAPAEEILWDGLWNLDDIHGNFSVANATNKASLYNLVAPFC* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00137 265 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Rops6g00137 265 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Rops6g00137 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Rops6g00137 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 198 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops6g00137 265 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Rops6g00137 265 SMART sant 75 123 IPR001005 -
Rops6g00137 265 SMART sant 22 72 IPR001005 -
Rops6g00137 265 CDD SANT 80 121 IPR001005 -
Rops6g00137 265 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Rops6g00137 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Rops6g00137 265 FunFam MYB transcription factor 80 160 - -
Rops6g00137 265 Gene3D - 23 75 - -
Rops6g00137 265 FunFam Myb transcription factor 23 75 - -
Rops6g00137 265 Gene3D - 80 124 - -
Rops6g00137 265 CDD SANT 25 70 IPR001005 -
Rops6g00137 265 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00137 Rops-Chr6 3528655 3529742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00137 18 265 MYB Transcription Factor Family AT4G13480 56.757 8.49e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g00137 Myb_DNA-binding 6.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00137 K09422 - gmx:100795981 428.713