Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00136 ATGTCACTACCGGAATGCTCGCCGGACCAACTGGCACAATTCCTCGGCCCCAACGCAACAAACGCCGCAGCCGCCGCAAGTTTCATCTGCGACCAATTCTCCGCCGTGGGAAACAAATTCAGCGACACAACATTCGCCATTGACAACACCTACCTTTTATTCTCAGCATACCTAGTTTTCTCGATGCAACTAGGTTTCGCCATGCTCTGCGCCGGTTCGGTTCGCGCCAAGAACACCATGAACATCATGCTCACTAACGTCCTAGACGCCGCAACCGGTGGCCTCTTCTATTACCTTTTCGGCTTTGCCTTTGCATTTGGGACACCTTCTAACGGTTTCATCGGTCGCCATTTCTTCGGTCTCAAAGATGTTCCATCTGTAAATTTTGATTACAGTTATTTTCTTTATCAATGGGCTTTTGCCATAGCCGCAGCTGGAATCACTAGTGGTTCTATAGCGGAAAGGACTCAGTTTGTGGCTTATTTGATTTACTCTTCTTTTCTCACTGGGTTTGTTTACCCTGTTGTTTCGCATTGGTTTTGGTCTGCTGATGGTTGGGCTAGTGCTACTAACACTGGGAACCTTTTGTTTGGAACTGGGGTTATTGATTTTGCTGGGTCTGGTGTTGTTCATATGGTGGGTGGTGTTGCTGGTTTATGGGGTGCCCTTATTGAAGGTCCTAGGATTGGGCGTTTTGATCATAATGGAAGGGCTATTGCTCTTCGTGGACATAGTGCTTCTTTGGTTGTTCTTGGAACCTTCATGCTTTGGTTTGGTTGGTATGGTTTTAACCCTGGTTCGTTTACCAAGATTCTCAGTGCTTATAATACGGGTAATTATTACGGTCAGTGGAGCGCGATAGGTAGGACGGCGGTGACGACAACCTTGGCCGGCTGCACGGCGGCGCTGACGACGCTTTTCGGGAAAAGGATCCTCTCCGGTCACTGGAACGTCACCGACGTGTGCAACGGCTTATTAGGCGGGTTCGCTGCCATCACCGCCGGTTGCTCCGTCGTGGAACCATGGGCAGCCATAGTGTGTGGCTTCATAGCGGCGGTTGTTTTAATCGCGTGCAACAAACTTGCTGACAAAGCGCGTTTCGATGACCCCTTAGAAGCAGCTCAACTTCACGGAGGTTGCGGCACGTGGGGCGTGATATTCACCGCACTGTTCGCAAAAGAAGAGTATGTGAATCAAGTTTACCCGGGTAAACCGGGTCGACCCTATGGGTTGTTCATGGGTGGTGGAGGGAAGCTTCTAGGGGCACATGTGATTCAAGTTTTGGTTATAATCGGGTGGGTGAGTGCCACAATGGGTCCTCTTTTCTTTGTTTTGAATAAGATGAAGTTGCTTCGGATCTCAGCTGAGGATGAACTTGCGGGTATGGATATGACCCGACATGGTGGGTTTGCTTATGCTTATGAGGATGAGTCAAATAAGCATGGAACTCAGTTGAGGAGGATTGAACCTAACTCTTCTTCCACACCCACCACAGATTCCTGA 1503 0.4923 MSLPECSPDQLAQFLGPNATNAAAAASFICDQFSAVGNKFSDTTFAIDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGTPSNGFIGRHFFGLKDVPSVNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSADGWASATNTGNLLFGTGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHNGRAIALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGNYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFIAAVVLIACNKLADKARFDDPLEAAQLHGGCGTWGVIFTALFAKEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQVLVIIGWVSATMGPLFFVLNKMKLLRISAEDELAGMDMTRHGGFAYAYEDESNKHGTQLRRIEPNSSSTPTTDS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00136 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Rops6g00136 500 NCBIfam ammonium transporter 48 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Rops6g00136 500 MobiDBLite consensus disorder prediction 478 500 - -
Rops6g00136 500 FunFam Ammonium transporter 29 487 - -
Rops6g00136 500 Gene3D Ammonium transporter AmtB like domains 27 492 IPR029020 -
Rops6g00136 500 Pfam Ammonium Transporter Family 51 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Rops6g00136 500 PANTHER AMMONIUM TRANSPORTER 21 475 - -
Rops6g00136 500 MobiDBLite consensus disorder prediction 485 500 - -
Rops6g00136 500 SUPERFAMILY Ammonium transporter 47 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00136 Rops-Chr6 3488300 3490449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00136 5 497 Inorganic Solute Cotransporters AT4G13510 80.639 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00136 K03320 - sind:105171825 841.647