Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00133 ATGGCTGCCACAGCTGCTGCAGGTATAGCTTCCTTTCTTTCTTCTTCCATCAACACTGTCAAATGTCTCCGTTCCAAGAACTGCACCATAGACCCTCTCATAACAACATCCTCAAACCGCATGTTAGCACCTTTGTCACAGTCCTACCTAGTGGAACCTTTGTCCATTTGTACCATCTCACATAAGTTGTGGGGTCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAAGTGGTAGTGGCTGCTGAGGAAGAGGAAGTGGTAGATGATGGTTTAGTTGAAGAGAAGGTGGTAGAGGAGGAGGAGAAGGACAAGGGAGAGGAAGAAGTGGTGGCAGAAGAAGAAACTGAACCTTCTGACAACACTAAGCTTTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAGGAATATGGTAGTGCAGAACTAATTGAGGTTCTTTACGACAGGGAAACTGGAAAAAGTAGAGGATTTGCATTTGTGACAATGAGTCGCATTGAAGATTGTAATGCAGTCATAGAGAATCTTGATGGGAAAGAATTCTTGGGCAGAACCTTGAGGGTGAACTTCTCTGACAAACCAAAAGCAAAGGAACCATTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTTCTGAGAGTCTAGCACAAGCCTTTCAAGAATATGGAACTGTGGTTGGAGCTAGAGTCTTATATGATGGGGAAACCGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAAAAAAATCAGAAATGGAAGCTGCCCTTGCCTCCTTGAATGACGTGGAATTAGAAGGAAGGGCAATGAGGGTAAGCTTGGCTGAAGGAAAACGTTGA 879 0.438 MAATAAAGIASFLSSSINTVKCLRSKNCTIDPLITTSSNRMLAPLSQSYLVEPLSICTISHKLWGPRISAAVAQEEVVVAAEEEEVVDDGLVEEKVVEEEEKDKGEEEVVAEEETEPSDNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRETGKSRGFAFVTMSRIEDCNAVIENLDGKEFLGRTLRVNFSDKPKAKEPLYPETEHKLFVGNLSWSVTSESLAQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSKKSEMEAALASLNDVELEGRAMRVSLAEGKR* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00133 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Rops6g00133 292 SMART rrm1_1 213 286 IPR000504 GO:0003723
Rops6g00133 292 SMART rrm1_1 122 195 IPR000504 GO:0003723
Rops6g00133 292 PANTHER OS02G0815200 PROTEIN 69 291 - -
Rops6g00133 292 SUPERFAMILY RNA-binding domain, RBD 115 202 IPR035979 GO:0003676
Rops6g00133 292 CDD RRM2_NsCP33_like 213 288 - -
Rops6g00133 292 Gene3D - 202 292 IPR012677 -
Rops6g00133 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Rops6g00133 292 MobiDBLite consensus disorder prediction 98 114 - -
Rops6g00133 292 Gene3D - 69 201 IPR012677 -
Rops6g00133 292 MobiDBLite consensus disorder prediction 98 118 - -
Rops6g00133 292 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 202 - -
Rops6g00133 292 FunFam 28 kDa ribonucleoprotein, chloroplastic 203 292 - -
Rops6g00133 292 SUPERFAMILY RNA-binding domain, RBD 205 291 IPR035979 GO:0003676
Rops6g00133 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 283 IPR000504 GO:0003723
Rops6g00133 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 193 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00133 Rops-Chr6 3454177 3457452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00133 119 291 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 9.50e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00133 - - aprc:113871254 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03564 8 75663740 75665983 Rops6g00133 6 3454177 3457452 PCT