Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00123 ATGTTACAGGATGTTATTCTCCCTCCAACACCGGCTGAGCAATTACACATTGAAGAAATTTCAAGCCCGATCAGTGCTAGAATTTTTGAACTATGTGACCCTGAATTGTTCCCAGAGTCTCTTCAGAATTCTGAGGTTACCTCAAGCTCAAATTGTTGCCATGAAGAGAACTCCTCATATGCAACAAATATATCTCCAACTTTAGATGTAGACAATAAGAATATAGTCACCACCCCATCTAGTACTACTACAACCACCATCACCACCACAAACAACAACACAACAAACAATTGTAACCTTTCTATTATCTATGACTCCCAAGAAGAACTTGACAATGACATATCTGCCTCCATAGACTTCTCATCATCTCCAAATTTTGTTGTCCCTCCACTTCTCCCAATCACAACTCAGCAGGAACAATTTGATTTCTCTTCAGCACAGCCCCAAGTCCAACAACTAGCAACAGGTTTAGTTTTGAAGGGCCTCTCTCAGTATCCTAATGATCCTGTTGTTGCACCTCTTATTGGGGGTCCATTACCATCAGTTTTTGAAGATGATGGCATGTCTTCTATCCCTTCTTATGTGCCTCTTAACCCTTCATCTCCTTCATGCTCTTATCTCAATCCTGGCATAGGAGTATACATGCCACCTGGGCCCCTTAATACTGCCTTATCTGCTGATAGTTCTGGATTATTTGGTGGGAACATGCTACTGGGATCTGAACTGCAGACACAAGAATTGGACTACCAAGGAGAAAATGGTGGAATATATTGTACAGATTCAATTCAGAGGGTGTTTAATCCACCAGACCTTCAGGCACTTGGAACTGAGAGTCAGAAACTGTTACCTGGGGCTGGGAGTTCTACCACTTTGGCACCAGAAATCTCACACTTGGAGGACACTACCTTAAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCATAGATACTTGAAGAAGAGAAATGAAAGAAACTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTGGCAGATAGCAGACCCCGGGTTAGAGGAAGGTTTGCAAAGAATGATGATTTTGGAGAGAATCATAGACCAGCTAGTAGCAACCATGAAGAAGATGATGAAGAAATAGTTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCCCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATCCAATCCTTGATTTGA 1233 0.412 MLQDVILPPTPAEQLHIEEISSPISARIFELCDPELFPESLQNSEVTSSSNCCHEENSSYATNISPTLDVDNKNIVTTPSSTTTTTITTTNNNTTNNCNLSIIYDSQEELDNDISASIDFSSSPNFVVPPLLPITTQQEQFDFSSAQPQVQQLATGLVLKGLSQYPNDPVVAPLIGGPLPSVFEDDGMSSIPSYVPLNPSSPSCSYLNPGIGVYMPPGPLNTALSADSSGLFGGNMLLGSELQTQELDYQGENGGIYCTDSIQRVFNPPDLQALGTESQKLLPGAGSSTTLAPEISHLEDTTLKVGKLSVEQRKEKIHRYLKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENHRPASSNHEEDDEEIVVKEDDDMVDSSDIFAHISGVNSFKCNYSIQSLI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00123 410 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Rops6g00123 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 188 371 IPR045281 GO:0009909
Rops6g00123 410 Pfam CCT motif 313 355 IPR010402 GO:0005515
Rops6g00123 410 MobiDBLite consensus disorder prediction 352 373 - -
Rops6g00123 410 MobiDBLite consensus disorder prediction 352 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00123 Rops-Chr6 3251573 3254227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00123 313 371 C2C2-CO-like Transcription Factor Family AT5G57660 46.875 1.59e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops6g00123 CCT 2.3e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00123 - - gmx:100793417 642.499