Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00111 ATGTTGAAAGCAGTAGCATCTGGATTGTTAATTGGCTTGCTCCTCATATCTGTGTCTGCAACAGATAATGGATTTTCCAAATGTAACTGTGAAGATGAGGCCAGCTTGTGGGCTATTGACAGCATTCTGGAGTGCCAAAAAGTTGGTGATTTCCTCATTGCTGTGGCCTATTTCTCAATCCCCATTGAGCTGCTTTACTTTGTCAGTTGCTCCAATGTTCCATTCAAATGGGTCCTCATTGAGTTCATTGCCTTCATTGTACTCTGTGGAATGACGCATTTGCTGAATGGATGGACTTATGGTCCTCACTCTTTTCAACTCATGGTGGCACTTACTATCTTGAAAATTCTCACTGCTTTGGTATCATGTGCCACTACTATAACCCTCCTCACTTTAATCCCTCTGCTTCTAAAAGTGAAGGTAAGAGAATTGATGCTGAAGAAAAAGGCCTGGGATCTTGGAAGGGAGGTTGGTTTAATAATGAAACAAAAGGAGGCATCAATGCATGTAAGAATGCTTACTCATGAGATTCGCAAGTCACTTGATAGGCATAAGATTCTTTACACCACCTTGGTTGAGCTGTCTAAAACTTTAAGCTTGCAAAATTGTGCTGTATGGATGCCTAATGTTGATAAAACAGAGATGAATCTGACACATGAATTGCATGGGAGGAATCTTAACTTCTCCATACCCATTACTGATTCAGATGTTGTAAGAATCACAGGAAATGATGGAGTAAACATAATTAGTTCTGACTCAGAGCTTGCTGCTGCCAGTAGTGGAATTTCTGGTGAGGCAGGATCAGTTGCTGCAATCCGAATGCCAATGCTTCGGGTTTGCAATTTCAAAGGGGGAACTCCTGAGCTAATGCAGGCATGTTATGCAATCTTGGTTTTGGTACTTCCTGATGGAGAGGCTAGATCTTGGAGCATTCAAGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTGGCTGTGGCTCTATCTCATGCTGCTATCCTTGAAGAATCACAACACATGAGAGAGACATTGGAGGGCCAAAATGGAGCTTTGCAACAGGAGAAAATGAAAGCTTTGATGGCAAGCCAGGCTAGAGCTTCATTTCAGAAGGTGATGAGCAATGGAATGAGAAGGCCAATGTACTCAATTCTGGGTTTGCTTTCAATGATGCAAGATGAGAATTTAAAGAGTGAACAGAAACTTATTGTGGATGCAATGCTAAGGACCAGCAGTGTCCTATCTAACTTGATCAATGATGCCATGGACAACTCGGATAGGGATGATGGAAGATTTCCTTTGGAGATGAAACCTTTTGGGTTACATGGCATGATAAAAGAAGCAGCTTGTGTTGCCAAGTGCATGTGTCTTTGTAAGGGTTTTGGTTTTAAGGTTGATGTTGATAAGTCTTTGCCTGACAATGTTATAGGTGATGAAAAGAGGGTTTTTCAGGTGATTTTTCATATTGTTGGGAGTGTAATAAATGGTAAGCATGGGGGTGGGATTCTCGTACTTCGAGTTTTTCCAGAAACTGGAAGTCAAGGAAGGAATGACCAAGGATGGACCACCTGGAGACCAAGCTCGTCTAGTGGGGATGTACATATTAGATTTGAGATAGGGATCAATAGTAGTGGTTCTGAATTGGAGAACACAGGGCAGTTTGCTGGTTGGAAGTGTACTAGTGGTAGGGTTGAGGAAAATTTGAGCTTCAGCATTTGCAAGAGGATCATCCAGTTGATGCAAGGGAACATATGGTTAATACCAAATGCTCAAGGTTTTCCTCAAGTCATGGCCCTTGTTCTTCGGTTTCAATTGCGGCAGTCTATTGCCATGACCATACATGAACCTGGAGACAGTTCAGAGCCTTCCAATTCAAATTCTTTCTTCAGAGGTCTGCAAGTCTTGTTGGCAGACAATGATGATGTAAATAGAGCAGTGACTCAAAAGTTGCTTCAGAAACTAGGTTGTGTGGTGACTTTTGTTTCATCAGGATTTGAATGCCTCAGTTTTATTGGACAAGCTGGATCTTCCTTTCAAGTTGTTCTTTTGGATCTTCAGATGCCTGAGTTAGATGGATTTGAAGTTGCTACACAGATCAGGAAGTTCAGAAGCCGGAATTGGCCTATGATCGTTGCCCTAACAGCGAGCTCAGAAAAAGATTTGTGTGAAAGATGCATGCAAATTGGCATTAATGGAGTTATTAGAAAGCCAGTGATGTTGCAAGGAATTGCTAATGAACTCAGAAGAATCCTGATGCAGGGAAATAAAGTCATGTGA 2274 0.4186 MLKAVASGLLIGLLLISVSATDNGFSKCNCEDEASLWAIDSILECQKVGDFLIAVAYFSIPIELLYFVSCSNVPFKWVLIEFIAFIVLCGMTHLLNGWTYGPHSFQLMVALTILKILTALVSCATTITLLTLIPLLLKVKVRELMLKKKAWDLGREVGLIMKQKEASMHVRMLTHEIRKSLDRHKILYTTLVELSKTLSLQNCAVWMPNVDKTEMNLTHELHGRNLNFSIPITDSDVVRITGNDGVNIISSDSELAAASSGISGEAGSVAAIRMPMLRVCNFKGGTPELMQACYAILVLVLPDGEARSWSIQELEIIKVVADQVAVALSHAAILEESQHMRETLEGQNGALQQEKMKALMASQARASFQKVMSNGMRRPMYSILGLLSMMQDENLKSEQKLIVDAMLRTSSVLSNLINDAMDNSDRDDGRFPLEMKPFGLHGMIKEAACVAKCMCLCKGFGFKVDVDKSLPDNVIGDEKRVFQVIFHIVGSVINGKHGGGILVLRVFPETGSQGRNDQGWTTWRPSSSSGDVHIRFEIGINSSGSELENTGQFAGWKCTSGRVEENLSFSICKRIIQLMQGNIWLIPNAQGFPQVMALVLRFQLRQSIAMTIHEPGDSSEPSNSNSFFRGLQVLLADNDDVNRAVTQKLLQKLGCVVTFVSSGFECLSFIGQAGSSFQVVLLDLQMPELDGFEVATQIRKFRSRNWPMIVALTASSEKDLCERCMQIGINGVIRKPVMLQGIANELRRILMQGNKVM* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00111 757 Pfam Response regulator receiver domain 633 743 IPR001789 GO:0000160
Rops6g00111 757 SMART gaf_1 182 338 IPR003018 GO:0005515
Rops6g00111 757 CDD HATPase_ETR2_ERS2-EIN4-like 470 600 - -
Rops6g00111 757 FunFam Ethylene receptor 629 753 - -
Rops6g00111 757 Pfam GAF domain 182 328 IPR003018 GO:0005515
Rops6g00111 757 Gene3D - 611 752 - -
Rops6g00111 757 SUPERFAMILY CheY-like 628 750 IPR011006 -
Rops6g00111 757 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 754 - -
Rops6g00111 757 CDD REC_ETR-like 631 746 - -
Rops6g00111 757 Gene3D - 428 603 IPR036890 -
Rops6g00111 757 SMART REC_2 631 750 IPR001789 GO:0000160
Rops6g00111 757 ProSiteProfiles Response regulatory domain profile. 632 750 IPR001789 GO:0000160
Rops6g00111 757 Gene3D - 161 329 IPR029016 -
Rops6g00111 757 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Rops6g00111 757 Coils Coil 334 354 - -
Rops6g00111 757 FunFam Ethylene receptor 4 331 425 - -
Rops6g00111 757 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 588 IPR036890 -
Rops6g00111 757 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Rops6g00111 757 Gene3D - 330 427 - -
Rops6g00111 757 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 351 430 IPR036097 GO:0000155|GO:0007165
Rops6g00111 757 PIRSF Ethylen_sen_hybr_HK 1 757 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Rops6g00111 757 SUPERFAMILY GAF domain-like 185 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00111 Rops-Chr6 2860304 2864795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00111 22 755 Miscellaneous Gene Families AT3G04580 56.684 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops6g00111 GAF 1.5e-10 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00111 K14509 - gmx:100802948 1194.49