Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00108 ATGTTGTTAGGCAATGGATACAAGATCAAAACCATTGTTTGGTGCTATACTTGTTCTTCTTCTTCTTCAAGAAAAAAGAAAACAGCAACTCTGGCTAATCCTTGGTGGACTCATCAGGTGGGGTTGCCTGGGGTTGACCCTTCAGGCAATTCACCATCTCTGAACAAACGCCACACAGAACTTTCCATCAACGAAAGCAACAACAACGGAGAAGAAGATGAAGAAAGAGACAACGTTGATGAAGAACCAAAAGAAGGAGCAGTTGAGGTTGGAACAAGAAGACCAAGAGGGAGACCCCCAGGTTCAAAAAACAAGCCAAAACCACCCATCTTTGTCACTAGGGATAGCCCCAATGCTCTGAGGAGCCATGTCATGGAGGTAGCTGGTGGTGCTGACGTGGCAGAGAGTGTTGCAAACTTTGCAAGGAGGCGTCAACGTGGTGTTTGTGTCCTCAGTGGTAGTGGTTCTGTTGCTAATGTTACCCTTAGACAACCAGCTGCACCTGGTGCTGTTGTGGCACTTCATGGAAGGTTTGAGATTCTCTCTTTAACTGGGGCATTCCTACCTGGACCTTCTCCTCCAGGTGCCACAGGTCTCACAGTGTACCTAGCTGGAGGACAGGGTCAAGTTGTTGGAGGAAGTGTTGTTGGGTCTTTGGTTGCTGCTGGACCTGTTATGGTGATAGCTGCAACTTTTGCTAATGCTACTTATGAGAGATTGCCACTTGAGGTTGAGGATGATGATGATGGTGGTGGTGGTGGTGGTAATGGAAGTAGTGCTGTTCAAGGAGGAGGTCCTATTGGAGGATCTCCTCCTGGAATTGGAGCTAGTGGGGGCCAGTTGCAACCTGGAATTCCAGATCCATCATCTTTGCCTTTGTATAATCTTCCACCAAATTTGTTACCCAATGGAGGCCAAGTGGGTCATGAAGCTTTTGCTTGGGCTCATGGAAGGCCACCTTATTGA 966 0.4772 MLLGNGYKIKTIVWCYTCSSSSSRKKKTATLANPWWTHQVGLPGVDPSGNSPSLNKRHTELSINESNNNGEEDEERDNVDEEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGADVAESVANFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPSPPGATGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEVEDDDDGGGGGGNGSSAVQGGGPIGGSPPGIGASGGQLQPGIPDPSSLPLYNLPPNLLPNGGQVGHEAFAWAHGRPPY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00108 321 CDD DUF296 121 204 IPR005175 -
Rops6g00108 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 243 - -
Rops6g00108 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 64 317 IPR014476 GO:0003680
Rops6g00108 321 Gene3D - 120 247 - -
Rops6g00108 321 MobiDBLite consensus disorder prediction 38 115 - -
Rops6g00108 321 MobiDBLite consensus disorder prediction 44 66 - -
Rops6g00108 321 MobiDBLite consensus disorder prediction 243 291 - -
Rops6g00108 321 PIRSF ESCAROLA 44 321 IPR014476 GO:0003680
Rops6g00108 321 ProSiteProfiles PPC domain profile profile. 117 257 IPR005175 -
Rops6g00108 321 FunFam AT-hook motif nuclear-localized protein 120 248 - -
Rops6g00108 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 121 233 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00108 Rops-Chr6 2800304 2801441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00108 31 321 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 61.745 5.15e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00108 - - mesc:110601522 376.326