Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00104 ATGGCGGAACATTCTGGAACATTCCAGAAGGTTCCTTCTCCATCGAAGAACGACAATGTCGTTTTCGTAAACGGCAACCCTGTCCTCGTTGCCCAGCCTCTCACGGTGGTTCGCGCACTCACCAGCACCGGCGGTGCTCGCGTTCTGGCGGCGCCGCCGCCGTATCCGAACTACGACGCAGCCAAAACGCCGTTGATCAAGGTGAAGGAGGAACCGTATGAAGTAGAAGAACAAGGAGAAACGATCGTCGACGATTCTCAGCCCTCGCCGGCGAAACCAGAACCGGTGGTTTCCGATGTTAAACGGTCAAAGCTTTCGTTCGATGAATTTCTCAAAGTTACGAACACAAAAATCGCATCCGAAGAGGAATCGCTGAAATCAATGAAAGAAGAAAAATCACCACCGATTCAAACGATGCAAGAAGTTTCCGACGTGGAAAACGTTCGTGTGAAGAAAGAGACGGTTATCGATAAATCTGTTTCTTCTTCTGTGAAGAAAGAAGTGGCTAGGGATGAAGTGGAGGTAGTGAAGGTGGTGAAGAAGGAAATAGTTGAAGAGAAGAAGATACCGAACCTCGAGGATGGGGAGTTTCCAGAAGAACCTGGTTGGTCATTGTTGGGAAGGAAAGTGGAGGTTGCGATTTCAACCGCGAAAGGAGTGAGGAGATTGGTGGACAATGAGATTGTTCACTTCAATTTCCCACTCCCAACTTCCAATTACAAGTTCCAATGGATCGTTCGCATTTCGACCAAGCGTTCTGGAGAGGTTGGGAGGCTGCCAATGGAATGGGCGAAAACTGTGATTCCGCTTGTGCAATCTGGGAATGTTAAGGTTCGAGGTCGATGCATTGCCACCCCATATAACCTGCAAATGATGCAAGAAATCATGTTGTTAGTGAGCTTTTACATTCACCACTCTGTATTCACAGAGCATGTTGATACCTCTTGGAGGCTAGATGCTTGTGGTAACATTGATTCTACCGTTTATCCACTCCTTTCACTGCTTAAAATGCTAGAAATTGAGCCATATCGGAAGGCTGAATTCACCCCAGAGGATATTGATACTCGGAAGCGGTTGCTTTATCGAAAGCTTGATTCAGATGAAGCTGCAGCATTGCCTATGACCAAGCGAAGAAAAGGTGGTGAGCCGCTTCCGGAGCAAACTGAGGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCTGCAGAAATCTTTGACCTGGTGGAGAAGGAAGCACCAGGCACCCTGATGTGTAATCTAAAGCCTTATCAGAAGCAAGCTCTCTATTGGATGTCAGAAATTGAGAAGGGAATGGATGTTGAAAGTGCTGAGAGAAATCTACATCCTTGCTGGTCAGCCTACAACATATGCAAGGGAAGGACAATTTATGTGAACATCTTCACGGGGGAAGCATCTAAGAAATTTCCAAAAGCAACACAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTCGGAAAGACTGTAATGACAATTGCTCTGATTCTCAGTAATCCAGGCAGGGTGAAGTCAGAAAACAGCGATGCTGAGAGTGTAAATGATAATATTATCACAAATAAGAGGAAGAATGCTAACACCTCGAATAAATTAGAGGGTGGTACTCTAATTGTTTGTCCCATGGCCTTATTAGGCCAGTGGAAGGATGAGCTTGAAACGCATTCGAAACCTGGCAGTATATCCATATTTGTTCATTATGGTGGGGGAAGAACCAATCATGTTGAGTTGATCTCAGGGTATGATGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATACAAAAGTGATGGAGAGCATAGCATCTACCACAGGGTCCAATGGTACAGGGTGGTGCTAGATGAAGCTCATATTATTAAAGCCCATAGAAACCTGGTTGCCCAGGCTGCTTTTACTTTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGAATAAGTTGGTTCAAAGGCCTTATGAGAATGGTGATCCAAGAGCCCTGAAATTGGTCAAGGCCATTTTGAGGACATTGATGTTAAGAAGAACGAAGGAAACAAAGGATAAACAGGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGGTTGAGTGTGAGCAGTCAGAATCTGAACGGGACTTCTATGATGCCCTCTTTGTGAGATCTAAAGTTCAATTTGATCAATATGTTGCACAAGGAAAGGTTCTTCACCACTATGCGAATATCCTTGACCTGCTAATGCAGTTGAGACGGTGCTGTAACCATCCATTTTTGGTTATGTGTGGCAATGATCCCCAGAAATATGCAGACTTAAGCAGATTCGCAAGAAAATTCCTCCAGTCTAATACCGAATCACCCGATAAATGCGGCCAAAGTGATCTGCGGCAATATGCAGAGTTGAACAAACTTGCCAGTAAATTCCTTATAAATTCTGATTCTTCGCACCCTATGCAATCTCGTGGATACATTGATGAGGTTTTGGAGCATATTCAAAAGGGTGAAACCGTAGAATGCTCTATATGTATGGAATCACCGGATGATCCTGTGTTTACACCATGTGCACATAGGTTTTGTAGAGAATGCCTATTTAATTGCTGGGGGAACTCAGCGGGTGGTAAGTGTCCAATCTGTCGTCAATTGCTCAAGAAAAATGATCTGATTACTAGTTCCTCTGAAAGCCCGTTCAAGGTTGATATTGAGAACAATCGGACCGAGTCTTCAAAGGTTTCAAAGCTATTGGATTACTTGCAACGTATTCAGAAGTCATCATCTGGTGAAAAAAGTATTGTCTTTAGCCAGTGGACTTCATTTTTTGATCTGTTGGAGAATCTATTGAGGAGGAGAGGAATTGGTTTTTTAAGATTTGATGGGAAATTGACTCAGAAACAGAGGGAGAAAGTTCTGAATGAATTTAGCGAGACAAGAGAGAAAAGGGTTTTATTGATGTCATTAAGAGCTGGTGGCGTGGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATAGGACAAAAGCGAAGAGTTATTGTTAGAAGATTCATCGTGAAGGACACAGTGGAAGATCGATTGCAACAAGTGCAAGCCAAGAAACAGAGGATGATATCTGGTGCCCTCACTGATGATGAGGTTCGGTCAGCTAGGATTCAAGACCTCAAAATGCTATTCTCATAG 3324 0.4425 MAEHSGTFQKVPSPSKNDNVVFVNGNPVLVAQPLTVVRALTSTGGARVLAAPPPYPNYDAAKTPLIKVKEEPYEVEEQGETIVDDSQPSPAKPEPVVSDVKRSKLSFDEFLKVTNTKIASEEESLKSMKEEKSPPIQTMQEVSDVENVRVKKETVIDKSVSSSVKKEVARDEVEVVKVVKKEIVEEKKIPNLEDGEFPEEPGWSLLGRKVEVAISTAKGVRRLVDNEIVHFNFPLPTSNYKFQWIVRISTKRSGEVGRLPMEWAKTVIPLVQSGNVKVRGRCIATPYNLQMMQEIMLLVSFYIHHSVFTEHVDTSWRLDACGNIDSTVYPLLSLLKMLEIEPYRKAEFTPEDIDTRKRLLYRKLDSDEAAALPMTKRRKGGEPLPEQTEDEQALSESALNKLVGAAEIFDLVEKEAPGTLMCNLKPYQKQALYWMSEIEKGMDVESAERNLHPCWSAYNICKGRTIYVNIFTGEASKKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRVKSENSDAESVNDNIITNKRKNANTSNKLEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTNHVELISGYDVVLTTYGVLSAAYKSDGEHSIYHRVQWYRVVLDEAHIIKAHRNLVAQAAFTLSSHCRWCLTGTPLQNSLEDLFSLLCFLRVEPWCNWAWWNKLVQRPYENGDPRALKLVKAILRTLMLRRTKETKDKQGRPILVLPPTDIQLVECEQSESERDFYDALFVRSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGNDPQKYADLSRFARKFLQSNTESPDKCGQSDLRQYAELNKLASKFLINSDSSHPMQSRGYIDEVLEHIQKGETVECSICMESPDDPVFTPCAHRFCRECLFNCWGNSAGGKCPICRQLLKKNDLITSSSESPFKVDIENNRTESSKVSKLLDYLQRIQKSSSGEKSIVFSQWTSFFDLLENLLRRRGIGFLRFDGKLTQKQREKVLNEFSETREKRVLLMSLRAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKDTVEDRLQQVQAKKQRMISGALTDDEVRSARIQDLKMLFS* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00104 1107 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 199 1106 - -
Rops6g00104 1107 SMART HIRAN_2 206 303 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops6g00104 1107 Gene3D - 728 1107 IPR027417 -
Rops6g00104 1107 Pfam Zinc finger, C3HC4 type (RING finger) 868 912 - -
Rops6g00104 1107 Coils Coil 111 131 - -
Rops6g00104 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 1096 IPR027417 -
Rops6g00104 1107 SMART helicmild6 971 1054 IPR001650 -
Rops6g00104 1107 Pfam SNF2-related domain 427 790 IPR000330 GO:0005524|GO:0140658
Rops6g00104 1107 ProSiteProfiles Zinc finger RING-type profile. 870 910 IPR001841 -
Rops6g00104 1107 SUPERFAMILY RING/U-box 859 915 - -
Rops6g00104 1107 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 480 674 IPR014001 -
Rops6g00104 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 712 IPR027417 -
Rops6g00104 1107 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 943 1103 IPR001650 -
Rops6g00104 1107 Pfam Helicase conserved C-terminal domain 941 1054 IPR001650 -
Rops6g00104 1107 CDD RING-HC 869 909 - -
Rops6g00104 1107 SMART ultradead3 420 693 IPR014001 -
Rops6g00104 1107 MobiDBLite consensus disorder prediction 372 386 - -
Rops6g00104 1107 MobiDBLite consensus disorder prediction 372 391 - -
Rops6g00104 1107 CDD SF2_C_SNF 926 1065 - -
Rops6g00104 1107 Pfam HIRAN domain 214 297 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops6g00104 1107 CDD DEXDc_SHPRH-like 424 712 - -
Rops6g00104 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 830 930 IPR013083 -
Rops6g00104 1107 MobiDBLite consensus disorder prediction 75 97 - -
Rops6g00104 1107 SMART ring_2 870 909 IPR001841 -
Rops6g00104 1107 Gene3D - 474 713 IPR038718 -
Rops6g00104 1107 FunFam DNA repair protein RAD5B 477 713 - -
Rops6g00104 1107 ProSitePatterns Zinc finger RING-type signature. 885 894 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00104 Rops-Chr6 2654449 2660621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00104 55 1106 RAD5 or RAD16-like Gene Family AT5G43530 58.404 0.0 1224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops6g00104 SNF2_N 1.4e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00104 K15505 - gmx:100806677 1594.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00104 6 2654449 2660621 Rops6g00104 6 2654449 2660621 ECH