Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00100 ATGGATTCTTTAGAAGACAGTGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCATGCTCCCACCGATTTCCTTTGGTCAAATCCAAGTGTGAGCACGGAAATTGACCTTCCAAGTGTTGCTGTTGCCTCTCAAGAGAACACCAGGAAGAGGGGACGCACTGATTCATGCTGCAAGGCAGGAACAAAAGCTTGCCGTGAGAAATTGCGAAGGGAGAAACTCAATGAAAGGTTTTGTGACTTGAGTGCTGTTTTGGAACCTGGGAGACCCGCGAAAACAGATAAATCAGCTATCCTCGATGATGCTATCAGAGTCTTGGGCCAACTTAAAACTGAAGCTCAGGAACTCAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTATTGAAAGCAGATAAAGAAAGGATTGAGAAGCAGTTGAAAGCTTTGCCAATTTCACATGCAGGGTTTATGCCTCAACCTATGGCTGCATATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTATATCCCAATGTGGCAATATCTTCCTCCATCTGCCAGAGATACATCCCATGATCATGAGCTCAGGCCTCCTGCTGCATAG 645 0.4341 MDSLEDSGCWDFLDYSFIDHAPTDFLWSNPSVSTEIDLPSVAVASQENTRKRGRTDSCCKAGTKACREKLRREKLNERFCDLSAVLEPGRPAKTDKSAILDDAIRVLGQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPISHAGFMPQPMAAYQAGVNKMAVYPNYGYIPMWQYLPPSARDTSHDHELRPPAA* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00100 214 Coils Coil 100 155 - -
Rops6g00100 214 FunFam Transcription factor bHLH104 62 143 - -
Rops6g00100 214 Pfam Helix-loop-helix DNA-binding domain 63 110 IPR011598 GO:0046983
Rops6g00100 214 Gene3D - 63 142 IPR036638 GO:0046983
Rops6g00100 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 137 IPR036638 GO:0046983
Rops6g00100 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
Rops6g00100 214 CDD bHLH_AtILR3_like 64 139 - -
Rops6g00100 214 PANTHER BHLH TRANSCRIPTION FACTOR 7 214 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Rops6g00100 214 SMART finulus 65 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00100 Rops-Chr6 2611926 2616105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00100 49 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 70.659 6.74e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g00100 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00100 - - gmx:100787583 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00100 6 2611926 2616105 Rops6g00100 6 2611926 2616105 ECH