Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00099 ATGGATTTTGTAAGCAAAAGACACTTGATTCATGTGTCACATACTTCATGTGTTTCACAAGCTCTTTCCCCTATCACAAGTCATCATCCTTATAGTACAAATTTTCCCATTGTAGCAATCATGGTAATAGGAATGTTGGCCACATCTTTCTTGCTTCTGGGCTACTACATCTTTGTGATCAAGTGTTGCCTCAGTAGGAGCCATGTTGATCTTGTAAGAGTGAGACGTTTTTCTCTATCTGAAGAGCCATCTTCAGTACAGACATCAGAGCCTAGAGGACTAGAAGAAGCAGTGATTCAGTTAATCCCAGTGATTCATTATAAGAAAGAAGGAGACAGTGAAAGAAGCTTCTGTGAATGTGCAGTTTGCTTGAATGAGTTTCAAGAGGGTGAGAAACTAAGGGTTATACCAAATTGCAACCATGTATTTCACATTGATTGTGTTGATGTTTGGCTTCAAAACAATGCCAATTGCCCACTTTGTAGAAGACACATTTCCTTGACAAGAGAAATCCATGTTGATCAGCTTCACACTCCAAGGCCTTCCCCTGAGGATCAAAGCCAAAATGTTGAGAACCTCATTGGTGGGGTTGAAGATTTTGTTGTGATTGATTTGGATAATGAACATGATGGAGACCAAAACTTGCAAGGAAGACAAGAAAGAGGCAAAGAGTTGGAGTTACCAACTTGTCCTATTAGTCCTTCACATAGAAAATTGGAGCAGAGAATTGTACAAAAGAAAGCAAGGAAGCTTCATAAAGTGATCAGCATGGGAGATGAGTGTATTAGTATTGGAGCTAAAGATGATGGGTTCTTAGTCCAACCCATGAGGAGGTCTTTCTCCATGGACTCATCAGAGCACAGACAGTTCTATATGGCAGCTCAACAGGGTTTTCAGCAACATAATGGGCATGTCCATGAGATTAGTTCCATTGAAGTTTGTGGTGGTAGTAGTGGTAAAGCCAAGAGATCATTGTTTTCCTTTGGACATGGAACTAGATCCAGAAGTGCTGTATTACCTGTTTATTTGGACCCCTGA 1038 0.4046 MDFVSKRHLIHVSHTSCVSQALSPITSHHPYSTNFPIVAIMVIGMLATSFLLLGYYIFVIKCCLSRSHVDLVRVRRFSLSEEPSSVQTSEPRGLEEAVIQLIPVIHYKKEGDSERSFCECAVCLNEFQEGEKLRVIPNCNHVFHIDCVDVWLQNNANCPLCRRHISLTREIHVDQLHTPRPSPEDQSQNVENLIGGVEDFVVIDLDNEHDGDQNLQGRQERGKELELPTCPISPSHRKLEQRIVQKKARKLHKVISMGDECISIGAKDDGFLVQPMRRSFSMDSSEHRQFYMAAQQGFQQHNGHVHEISSIEVCGGSSGKAKRSLFSFGHGTRSRSAVLPVYLDP* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00099 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 167 IPR013083 -
Rops6g00099 345 Pfam Ring finger domain 119 162 IPR001841 -
Rops6g00099 345 SUPERFAMILY RING/U-box 119 169 - -
Rops6g00099 345 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Rops6g00099 345 CDD RING-H2_EL5-like 119 162 - -
Rops6g00099 345 PANTHER RING-H2 FINGER PROTEIN ATL16 23 341 IPR044600 GO:0016567|GO:0016740
Rops6g00099 345 SMART ring_2 120 161 IPR001841 -
Rops6g00099 345 FunFam E3 ubiquitin-protein ligase ATL6 82 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00099 Rops-Chr6 2603580 2605132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00099 33 345 C3H Transcription Factor Family AT1G04360 46.064 2.43e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00099 - - gmx:100775286 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03090 8 68643672 68644667 Rops6g00099 6 2603580 2605132 PCT