Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00097 ATGGATGAAGAAAGTTCAAGAGGAAAAGCCAATGAAGAAGAACATGTCAAGTATAGAGGTGTACGAAGAAGACCATGGGGAAAATTTGCAGCAGAAATTCGTGACTCAACAAGACAAGGTCAGAGGTTATGGCTTGGAACTTTCAACACAGCTGAAGAAGCAGCTAGAGCTTATGATAGAGCTGCTTATGCTATGAGGGGTCCCTTTGCAGTTCTCAATTTTCCTGATGAATACCCTCCTTCAGCAGGTGGTGGTGGTGTTGCTTCTTATTCCTCTGCTGCTTCTTCTTCTTCAGTTTCAGCTTCAGCTTCATCTTCAAGGCATGGAAATGTGGAAGGAGAAGGAAGGAGTGAGCAAGGAAAACAAGTCTTTGAGATTGAGTACTTTGATGACAAATTATTGGAGGAGCTTCTTGGTTATGAAGAGAAAAAGGAAAAGAAATCTTGA 447 0.4183 MDEESSRGKANEEEHVKYRGVRRRPWGKFAAEIRDSTRQGQRLWLGTFNTAEEAARAYDRAAYAMRGPFAVLNFPDEYPPSAGGGGVASYSSAASSSSVSASASSSRHGNVEGEGRSEQGKQVFEIEYFDDKLLEELLGYEEKKEKKS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00097 148 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Rops6g00097 148 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Rops6g00097 148 MobiDBLite consensus disorder prediction 88 110 - -
Rops6g00097 148 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Rops6g00097 148 MobiDBLite consensus disorder prediction 82 119 - -
Rops6g00097 148 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Rops6g00097 148 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Rops6g00097 148 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Rops6g00097 148 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Rops6g00097 148 PANTHER DNA-BINDING DOMAIN 10 143 IPR044808 GO:0003700|GO:0009873
Rops6g00097 148 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Rops6g00097 148 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00097 Rops-Chr6 2557824 2558270 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00097 12 144 AP2-EREBP Transcription Factor Family AT3G23230 55.639 1.60e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g00097 AP2 2.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00097 - - gmx:100775830 172.555