Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00095 ATGGAGGAACACCATAAGAGAAAGCAAGAGAAGAGAAGGGAAAGAGAAGAAGTTAGATACCGAGGTGTAAGGAAAAGGCCATGGGGTAAGTATGCAGCTGAGATCAGAGACCCTTCAAAGGAAAGGTCAAGACTTTGGTTAGGGACCTTTGATACAGCTGAAGAAGCTGCTAGAGCTTATGATCAAGCAGCTTTTAACTTGAAGGGTCATGTTGCAATTTTGAATTTTCCTAATGGGTACCATTCTCAAGATACTAGGGGCTATCCTCCAAATTTAGCATCATCTAGTGGCAGTTCTTCTAGTGGGCAACAGAGGCAGGTTTTTGAGTTTGAGTATCTTGATGATAAGGTTTTGGAGGAGCTTCTTGAATCAGAAGAGGAGAAGAACAAGGGGAAGAAAGGTTGA 405 0.4247 MEEHHKRKQEKRREREEVRYRGVRKRPWGKYAAEIRDPSKERSRLWLGTFDTAEEAARAYDQAAFNLKGHVAILNFPNGYHSQDTRGYPPNLASSSGSSSSGQQRQVFEFEYLDDKVLEELLESEEEKNKGKKG* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00095 134 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Rops6g00095 134 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Rops6g00095 134 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Rops6g00095 134 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Rops6g00095 134 Coils Coil 1 21 - -
Rops6g00095 134 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Rops6g00095 134 MobiDBLite consensus disorder prediction 78 105 - -
Rops6g00095 134 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Rops6g00095 134 FunFam Ethylene-responsive transcription factor 2 18 78 - -
Rops6g00095 134 Pfam AP2 domain 19 70 IPR001471 GO:0003700|GO:0006355
Rops6g00095 134 PANTHER DNA-BINDING DOMAIN 9 127 IPR044808 GO:0003700|GO:0009873
Rops6g00095 134 CDD AP2 22 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00095 Rops-Chr6 2461472 2461876 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00095 1 128 AP2-EREBP Transcription Factor Family AT3G23230 57.971 8.02e-48 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g00095 AP2 4.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00095 - - gmx:100814296 148.673