Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00092 ATGGATTGTTCCTCCACACCCCAATTATCAAAATCCGATTTTTCTTCCGAATTTTCATTTGGGTCACCACCAAACTCGTTGTTCTCTTTGAACGATCACTTCCTACCCTTCAATGAAAACGACCCAGAAGAGATGCTTCTCTATGGCATGATCACATCATCATCATCATCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCATCACAAAAAGGACTTGGTAATGGCAGTGGCAAGAACAAGGAGAAGAACAAGGCCTATAGAGGTGTGCGGCGGCGGCCATGGGGGAAGTTCGCGGCGGAGATAAGGGACTCAACAAGGCATGGCATAAGGGTGTGGCTCGGAACATTTGATAGTGCTGAAGCAGCTGCACTAGCTTATGATCAAGCTGCTTTTTCCATGAGGGGTTCTTCTGCAATACTTAATTTTCCTGTTGAGAGGGTGAAGGAATCACTTAGGGACATGAATCATCATATCTCTCAAGATGATGATTGTTCACCTGTGGTGGCTTTGAAGAGAAAACACTCTTTGAGGCGCAAAATGGGTGGTAAGAAGAAGAATGATAATGATGATGTTAGGATAGACAATGTGGTTGTATTGGAAGATTTAGGTGAAGAATATTTGGAACAATTGTTGATGTCTTCTGACAATCAAAGTACATGGTGA 672 0.4435 MDCSSTPQLSKSDFSSEFSFGSPPNSLFSLNDHFLPFNENDPEEMLLYGMITSSSSSSSSSSSSSSSSSSSQKGLGNGSGKNKEKNKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVKESLRDMNHHISQDDDCSPVVALKRKHSLRRKMGGKKKNDNDDVRIDNVVVLEDLGEEYLEQLLMSSDNQSTW* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00092 223 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Rops6g00092 223 MobiDBLite consensus disorder prediction 53 79 - -
Rops6g00092 223 MobiDBLite consensus disorder prediction 1 20 - -
Rops6g00092 223 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Rops6g00092 223 PRINTS Ethylene responsive element binding protein signature 128 148 IPR001471 GO:0003700|GO:0006355
Rops6g00092 223 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Rops6g00092 223 PANTHER DNA-BINDING DOMAIN 56 216 IPR044808 GO:0003700|GO:0009873
Rops6g00092 223 MobiDBLite consensus disorder prediction 53 92 - -
Rops6g00092 223 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Rops6g00092 223 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Rops6g00092 223 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Rops6g00092 223 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Rops6g00092 223 CDD AP2 89 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00092 Rops-Chr6 2298486 2299383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00092 35 223 AP2-EREBP Transcription Factor Family AT3G23240 62.694 8.38e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops6g00092 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00092 K14516 - cave:132179340 238.039