Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00090 ATGGAACGTGGGGTTCTTGATGCTATCATCAATAGGTTGCTTGAAGTTAGAGGGAGACCTGGGAAACAGGTGCAGCTTTCAGAGGCAGAAATCAAGCAGCTTTGAGATATCCATGGTCAATATTCTGATCTTCTGAGACTTTTTGAGCATGGTGGATTACCTCCTCGTTCCAATTACTTATTCTTAGGTGATTATGTGGATCGTGGAAAGCAAAGCTTGGAAACAATATGTCTTCTTTTGGCCTATAAAATAAAATATCCTGAAAACTTTTTCCTTCTAAGGGGCAACCATGAATGTGCTTCTATAAACCGTGTTTATGGATTCTATGATGAATGTAAAAGGAGATTCAATGTCAGGATATGGAAAATATTTTCAGATTGTTTCAATTGTTTGCCTGTGGCAGCTATCATTGATGAAAAGATAATTTGCATGCATGGTGGAATCTCTCCTGAATTGCACAATCTGAATCAGATAAGTAGTTTGCCACGTCCAACAGAAGTTCCTGAAACTGGTTTACTATGTGATATCCTATGGTCTGATCCTAGTAAAGATGTTCAAGATTGGGGTATGAATGAACGTGGAGTTTCATATACTTTTGGTGCTAGCAGGGTCACAGAATTTCTTGAAAAGCATGATCTTGACTTGATTTGTAGAGCACACCAGGTTGTTGAAAATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTGTATTTTCTGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGAGCAATGATGACTGTTGATGAGACACTTATGTGCTCTTTTCAGATATTAAGGCCTCAGGATCATAAAAGGCCCAAGTTTGGTTTTGGGAGCAGAACTTCATTCAAGCGGGCATTACTTGGTACTAAAGTATGA 888 0.3851 MERGVLDAIINRLLEVRGRPGKQVQLSEAEIKQL*DIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRIWKIFSDCFNCLPVAAIIDEKIICMHGGISPELHNLNQISSLPRPTEVPETGLLCDILWSDPSKDVQDWGMNERGVSYTFGASRVTEFLEKHDLDLICRAHQVVENGYEFFANRQLVTVFSAPNYCGEFDNAGAMMTVDETLMCSFQILRPQDHKRPKFGFGSRTSFKRALLGTKV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00090 294 PRINTS Serine/threonine phosphatase family signature 125 151 IPR006186 GO:0016787
Rops6g00090 294 PRINTS Serine/threonine phosphatase family signature 29 56 IPR006186 GO:0016787
Rops6g00090 294 PRINTS Serine/threonine phosphatase family signature 58 85 IPR006186 GO:0016787
Rops6g00090 294 PRINTS Serine/threonine phosphatase family signature 233 249 IPR006186 GO:0016787
Rops6g00090 294 PRINTS Serine/threonine phosphatase family signature 91 115 IPR006186 GO:0016787
Rops6g00090 294 PRINTS Serine/threonine phosphatase family signature 154 181 IPR006186 GO:0016787
Rops6g00090 294 PRINTS Serine/threonine phosphatase family signature 211 231 IPR006186 GO:0016787
Rops6g00090 294 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 35 275 - -
Rops6g00090 294 SMART pp2a_7 1 271 IPR006186 GO:0016787
Rops6g00090 294 SUPERFAMILY Metallo-dependent phosphatases 35 274 IPR029052 -
Rops6g00090 294 Pfam Serine-threonine protein phosphatase N-terminal domain 6 34 IPR031675 -
Rops6g00090 294 ProSitePatterns Serine/threonine specific protein phosphatases signature. 92 97 IPR006186 GO:0016787
Rops6g00090 294 Gene3D - 3 278 IPR029052 -
Rops6g00090 294 FunFam Serine/threonine-protein phosphatase 30 281 - -
Rops6g00090 294 Pfam Calcineurin-like phosphoesterase 35 221 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00090 Rops-Chr6 2234639 2240015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00090 35 214 Calmodulin-binding Proteins AT5G63870 32.558 2.80e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00090 K06269 - gmx:100780047 540.421