Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00087 ATGATGCTTAAGGTGGCTGATCTTGGACTTGCTCGAGCATTCACTGTGCCGATTAAGAAGTACACGCACGAGATACTAACCCTTTGGTATAGAGCTCCTGAAGTCCTGTTGCGAGCTACCCATTACTCAATGGCAGTGGATATGTGGTCAGTTGGCTGCATATTCGCTGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCGGAGCTGCAACAACTCCTTCATATATTCAGGCTGTTGGAAGACGTGTGGCCAAGAGTTAGTAAACTAATTGGAATGAGCACCCCAGTGGAGCCCTCAGAGTCTCAAAACCGCTGTTTCAAATTTGGATGA 336 0.4702 MMLKVADLGLARAFTVPIKKYTHEILTLWYRAPEVLLRATHYSMAVDMWSVGCIFAELVTKQALFPGDSELQQLLHIFRLLEDVWPRVSKLIGMSTPVEPSESQNRCFKFG* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00087 111 Gene3D Transferase(Phosphotransferase) domain 1 3 83 - -
Rops6g00087 111 Pfam Protein kinase domain 2 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00087 111 PANTHER CELL DIVISION PROTEIN KINASE 3 88 - -
Rops6g00087 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00087 111 SUPERFAMILY Protein kinase-like (PK-like) 2 82 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00087 Rops-Chr6 2159367 2159702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00087 1 91 Core Cell Cycle Gene Families AT1G20930 83.158 1.88e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Rops6g00087 Pkinase 1.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00087 K07760 - gmx:100808302 175.252