Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00083 ATGGTTAGAGCTCCTTGCTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGACCCCAGAGGAAGATGAAATCCTCATATCTTATATCAAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAACATGCAGGTCTACTAAGATGTGGAAAGAGCTGCAGATTGAGGTGGATTAACTATTTAAGGCCTGATATCAAGAGAGGAAATTTCTCAAGTGAAGAAGAGGAAATTATCATTAAGATGCATGAGTTACTTGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCTGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACTTACTTGAAGAAGAGGCTAGTGAAAACCAACCAACCCAATTCAGATAGCAAAAGAGTTTCCAAACCAAAAATCGAAAGAACTGATTCCAATTCCAGTACACTAACTCAATCAGAACATGCAAGTCTCAATTCCCCTGAAATGGAGACTACATCAGTTTGCACTTCTTTTGGTGATTTTTCATCTGATGGAAAAATTATGGACAACAGTATCAAAAGTGAAGACATAGAGTCTCTTGTGACAATGCCTGAAATTGATGAAAGTTTTTGGTCAGAGGAAACTATGGATGATGAAAGTTCCACCATGCCATCATCAAATTCTTGGACAGTGTCAAATGAATTGCCACCTCAATATACATTTGATTCAGTGGAAACTTTGCAACAGAGTTATGTTTATAGCTCAAACTTTGATGATGGCATGGATTTTTGGTATGACTTGTACATCAGATCCGGGGAGTCAATAGAATTGCCAGAGTTCTGA 807 0.3903 MVRAPCCEKMGLKKGPWTPEEDEILISYIKKHGHGNWRALPKHAGLLRCGKSCRLRWINYLRPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTYLKKRLVKTNQPNSDSKRVSKPKIERTDSNSSTLTQSEHASLNSPEMETTSVCTSFGDFSSDGKIMDNSIKSEDIESLVTMPEIDESFWSEETMDDESSTMPSSNSWTVSNELPPQYTFDSVETLQQSYVYSSNFDDGMDFWYDLYIRSGESIELPEF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00083 268 CDD SANT 69 112 IPR001005 -
Rops6g00083 268 MobiDBLite consensus disorder prediction 119 158 - -
Rops6g00083 268 FunFam Transcription factor MYB15 68 141 - -
Rops6g00083 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 211 - -
Rops6g00083 268 CDD SANT 16 61 IPR001005 -
Rops6g00083 268 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Rops6g00083 268 Gene3D - 13 66 - -
Rops6g00083 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops6g00083 268 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops6g00083 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops6g00083 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Rops6g00083 268 SMART sant 13 63 IPR001005 -
Rops6g00083 268 SMART sant 66 114 IPR001005 -
Rops6g00083 268 FunFam Myb transcription factor 11 67 - -
Rops6g00083 268 MobiDBLite consensus disorder prediction 136 158 - -
Rops6g00083 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Rops6g00083 268 Gene3D - 69 149 - -
Rops6g00083 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00083 Rops-Chr6 1953593 1955742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00083 1 268 MYB Transcription Factor Family AT2G31180 50.923 9.15e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g00083 Myb_DNA-binding 7.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00083 K09422 - gmx:100806975 403.29