Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops6g00079 | ATGGCAGATCTTGCTAGTTATTCTGGCCATGATATTGAGCAAGCATTCATCGCTTTGAAAAAGGGCACTCAGTTAGTTAAGTATAGTCGAAAAGGGAAGCCAAAGTTTTGTACATTCAGGCTCTCACTGCAGGATGAAACAAAACTGATTTGGATTTCTCATGGAAAGGAAAAGAATTTGAAGTTGTCTTCTGTTTTGCGCATCATCCCGGGACAGAGAACAGCTGTCTTCAGAAGATATTTGCGCCCTGAAAAGGATTATCAGTCATTTTCACTTATTTACAAAAAAGGGGAACGATCACTTGATCTGATCTGCAAGGACAAAGCTGAGGTCGAGGCATGGGTTTCATGCCTTAAGGCATTAATTTCTACCAGACAGCATATTAGGCGGCATAGTGGAAGTGATTTAACAGATGATAGTGTTGGCATTGATCTGAATGATCGTCCTTTTGGTGGAACAGTAGAGTTTACTTCAAGCTTAGCCCGGGGCAGGTTTTCTATTGATTCAGTTTCTCGTGAATCTACATCAAGTTGGGGAAGAACTGATGTGGGATCAGAACATGCAAATATGCCAATAAGGACAAGTATTGGAGATGGTTCCCGTGTTAGTGTGTCAAGTATTGGCTACGCAAGTAGTACAGGATCAGGACCAGATGACATAGAATCTCTAGGTGATGTTTTTATATGGGGAGAGGTTTGGGCAGATAGCAATTCATTTGAAGGGTGTGGGAGTCAAGTGCCTTGTAAAACAGATGTGTTGATTCCTAAGCCATTAGAGTCTGATGTTGTTCTTGATGTTCATCAGATTGGTCCTGGTGCACTTCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACTTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGTTTTGATAAAGATTTTGGTAGACCCCATCTTGTGGAGCCCCTTGCAATTACTAATGTGAGTTTTGTTGCATGTGGTGAATATCATACATGTGCTGTATCTACATCTGGTGATCTATTCACCTGGGGTGATGGTGCACATAATGCTGGACTTCTTGGCCATGGCACTGATGTTAGCCATTGTATACCAAAGAGGGTCACTGGCCCTTTAGAGGGACTTCAGGTTGTGTCTGTGGCTTGTGGCACATGGCATTCAGCATTGGCAACTTCCAATGGAAAATTGTTCACCTTTGGTGATGGAATATTTGGCGTCTTGGGCCATGGAGATAGAGAGAGTGTGGCATATCCAAAGGAGGTACAATTACCAAGTGGACAAAAGGCTATTAAGGTTGCATGTGGAGTATGGCACACAGCAGCCATTATAGAGGTTATGGATCCTTCTGGTTCAAATGCTGCATCCAGGAAGCTCTTCACATGGGGTGATGGTGACCACTATCGCTTGGGACATGTTAACAAGGAAACCTACCTTCAACCAACTTGTGTAGCTGCACTTGCTGAATATAGTTTTCACCAGATTGCATGTGGACGCACTATGACTGTTGCACTCACTGCGTCTGGTCATGTTTTTACTATGGGAAGCACACAATATGGTCAACTAGGAAATCCAATGTCTGATGGAAAAGTGCCAATTCTAGTTAGAGATAAGTTAGTAGGTGAGTTTGTGGAGGAAATATCATGTGGGGCACATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTGGGACATGGAGACACAGATGACCAGAAAACTCCAACATTGGTGGAAGCCTTGAAAGACAGGCATGTGAAGAATATCTATTGTGGCTCATGCTTTACAACTTGTATATGCATACATAAATGGGCTTCTGGAATTGACCAATCTGTTTGCTTTGATTGTAGACAACCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCATTGAAAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGGATGTTATACTAAGCTTAAAGGTTCTGAAAGTGCTGCTTCCAGCATTAGTAGAGATATGACTCGTCCTTATAGTTCCACATATGGAAGGGGAGAGGTAAAGCCTTCAAGAAATCTCTTGTCTCCTTCAGTAGGTCCAGTAAAATACCTTGAGAAAAGGAGTAGTAAGCATGATTCTTCTTCCATAGTCCAAGCTGCTCAACTTCCTTTTCGTTTACAATTGAAAGATGTTATATTTCCTGGTTCATCAAGTACTATGCAGAATGCTTCCAAGCCTGTTCTACAACCAAGTCAACCTCAAACTCCACCTCCAGCAGCTATTTCAAGACCAACTTCACCATATACAAGAAGACCACCAAGTCCACCACGTTCTACTTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTCAAGAAGAAAAATGAGCATTTGAATCAAGAAGTCTCAAAATTGCAAAACCAAATACGAAATTTGAAGCAAAAGGGTGACATGCAAGATATGAAGATTCAGGAGCTTCAGAAAAATATTGAGGAAGCCACCTCATTGGCTGGAGAGGAATCTTCTAAGCATAGAGAAGCAAAGGAATTCATCAAGTCCATGACATATCAGTTGAGGGAAGTGACCAAGAAGTTGCCACCAGAGATTCCTCACAATGAAACACTGAGAAGCCTGCATGCTCAAGCTGAATATTTTCTTAAAGAAAAAACAGAATTTGAATCTTCTTCATTCTCATCAAGCTTTGAGTCTGAGCAACAAAGTGCACCTGATATACCAGCCTCAGATAGTGACTCTTCAAACCTGCAAGAGCAAAGACTGGAAGGAAATGATGAAGCTTCTGGGTTTTCTCAATCTATAGATGGAGGAAATGTTAATCAAGAAAGTAACAGTTCATCTGAATCTAGCACAGGAGTAACTCCACCAAGATCAGAAAATAGTTCAAGATCACCAGAGTCTTATAAGTCTGTTAGAGAAGGAGAAACATCAGTCATTGAACAATTTGAGCATGGTGTTTATGTCACTCTCATAGTACTACCTAGTGGTGCCAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGATTCGATGAGCAACAGGCAGAAGAATGGTGGAACAAGAACAAAGATAGGGTGCTTAGTAAATACAGTCCAGCAGCTATAAAGAGTGCAGTTACTAGAACATCTATCACCCCACCTCAAGGTCAAGAGCATATTGAGGCATCACCTTCTTCCTAA | 3234 | 0.4153 | MADLASYSGHDIEQAFIALKKGTQLVKYSRKGKPKFCTFRLSLQDETKLIWISHGKEKNLKLSSVLRIIPGQRTAVFRRYLRPEKDYQSFSLIYKKGERSLDLICKDKAEVEAWVSCLKALISTRQHIRRHSGSDLTDDSVGIDLNDRPFGGTVEFTSSLARGRFSIDSVSRESTSSWGRTDVGSEHANMPIRTSIGDGSRVSVSSIGYASSTGSGPDDIESLGDVFIWGEVWADSNSFEGCGSQVPCKTDVLIPKPLESDVVLDVHQIGPGALHIALVTRQGEVFTWGEDSGGRLGHGFDKDFGRPHLVEPLAITNVSFVACGEYHTCAVSTSGDLFTWGDGAHNAGLLGHGTDVSHCIPKRVTGPLEGLQVVSVACGTWHSALATSNGKLFTFGDGIFGVLGHGDRESVAYPKEVQLPSGQKAIKVACGVWHTAAIIEVMDPSGSNAASRKLFTWGDGDHYRLGHVNKETYLQPTCVAALAEYSFHQIACGRTMTVALTASGHVFTMGSTQYGQLGNPMSDGKVPILVRDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTDDQKTPTLVEALKDRHVKNIYCGSCFTTCICIHKWASGIDQSVCFDCRQPFGFTRKRHNCYNCGLVFCHPCSSKKALKAALAPTPSKPHRVCDGCYTKLKGSESAASSISRDMTRPYSSTYGRGEVKPSRNLLSPSVGPVKYLEKRSSKHDSSSIVQAAQLPFRLQLKDVIFPGSSSTMQNASKPVLQPSQPQTPPPAAISRPTSPYTRRPPSPPRSTSPGFSRSLIDNFKKKNEHLNQEVSKLQNQIRNLKQKGDMQDMKIQELQKNIEEATSLAGEESSKHREAKEFIKSMTYQLREVTKKLPPEIPHNETLRSLHAQAEYFLKEKTEFESSSFSSSFESEQQSAPDIPASDSDSSNLQEQRLEGNDEASGFSQSIDGGNVNQESNSSSESSTGVTPPRSENSSRSPESYKSVREGETSVIEQFEHGVYVTLIVLPSGAKVFKRVRFSKRRFDEQQAEEWWNKNKDRVLSKYSPAAIKSAVTRTSITPPQGQEHIEASPSS* | 1078 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops6g00079 | 1077 | CDD | PH_PLC_plant-like | 11 | 123 | - | - | |
| Rops6g00079 | 1077 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 452 | 503 | IPR000408 | - | |
| Rops6g00079 | 1077 | Gene3D | - | 9 | 132 | IPR011993 | - | |
| Rops6g00079 | 1077 | MobiDBLite | consensus disorder prediction | 1057 | 1077 | - | - | |
| Rops6g00079 | 1077 | SUPERFAMILY | FYVE/PHD zinc finger | 609 | 683 | IPR011011 | - | |
| Rops6g00079 | 1077 | PRINTS | Chromosome condensation regulator RCC1 signature | 335 | 351 | IPR000408 | - | |
| Rops6g00079 | 1077 | PRINTS | Chromosome condensation regulator RCC1 signature | 285 | 301 | IPR000408 | - | |
| Rops6g00079 | 1077 | PRINTS | Chromosome condensation regulator RCC1 signature | 376 | 392 | IPR000408 | - | |
| Rops6g00079 | 1077 | PRINTS | Chromosome condensation regulator RCC1 signature | 551 | 572 | IPR000408 | - | |
| Rops6g00079 | 1077 | PRINTS | Chromosome condensation regulator RCC1 signature | 392 | 406 | IPR000408 | - | |
| Rops6g00079 | 1077 | PRINTS | Chromosome condensation regulator RCC1 signature | 493 | 511 | IPR000408 | - | |
| Rops6g00079 | 1077 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 195 | 443 | - | - | |
| Rops6g00079 | 1077 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 428 | 438 | IPR000408 | - | |
| Rops6g00079 | 1077 | Coils | Coil | 801 | 856 | - | - | |
| Rops6g00079 | 1077 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 556 | 607 | IPR000408 | - | |
| Rops6g00079 | 1077 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 611 | 684 | IPR013083 | - | |
| Rops6g00079 | 1077 | MobiDBLite | consensus disorder prediction | 909 | 992 | - | - | |
| Rops6g00079 | 1077 | Gene3D | - | 447 | 610 | IPR009091 | - | |
| Rops6g00079 | 1077 | SMART | fyve_4 | 606 | 675 | IPR000306 | GO:0046872 | |
| Rops6g00079 | 1077 | MobiDBLite | consensus disorder prediction | 909 | 985 | - | - | |
| Rops6g00079 | 1077 | SUPERFAMILY | PH domain-like | 11 | 122 | - | - | |
| Rops6g00079 | 1077 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 335 | 389 | IPR000408 | - | |
| Rops6g00079 | 1077 | MobiDBLite | consensus disorder prediction | 681 | 710 | - | - | |
| Rops6g00079 | 1077 | Gene3D | - | 199 | 446 | IPR009091 | - | |
| Rops6g00079 | 1077 | MobiDBLite | consensus disorder prediction | 750 | 799 | - | - | |
| Rops6g00079 | 1077 | Pfam | FYVE zinc finger | 608 | 673 | IPR000306 | GO:0046872 | |
| Rops6g00079 | 1077 | MobiDBLite | consensus disorder prediction | 763 | 792 | - | - | |
| Rops6g00079 | 1077 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 283 | 334 | IPR000408 | - | |
| Rops6g00079 | 1077 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 390 | 441 | IPR000408 | - | |
| Rops6g00079 | 1077 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 612 | 674 | IPR017455 | - | |
| Rops6g00079 | 1077 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 56 | 873 | - | - | |
| Rops6g00079 | 1077 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 504 | 555 | IPR000408 | - | |
| Rops6g00079 | 1077 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 994 | 1048 | IPR013591 | - | |
| Rops6g00079 | 1077 | ProSiteProfiles | BRX domain profile. | 994 | 1049 | IPR013591 | - | |
| Rops6g00079 | 1077 | SUPERFAMILY | RCC1/BLIP-II | 223 | 609 | IPR009091 | - | |
| Rops6g00079 | 1077 | Pfam | Transcription factor BRX N-terminal domain | 852 | 887 | IPR027988 | - | |
| Rops6g00079 | 1077 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 283 | 331 | IPR000408 | - | |
| Rops6g00079 | 1077 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 557 | 604 | IPR000408 | - | |
| Rops6g00079 | 1077 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 334 | 385 | IPR000408 | - | |
| Rops6g00079 | 1077 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 389 | 438 | IPR000408 | - | |
| Rops6g00079 | 1077 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 454 | 500 | IPR000408 | - | |
| Rops6g00079 | 1077 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 503 | 552 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops6g00079 | Rops-Chr6 | 1894553 | 1900237 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops6g00079 | 991 | 1049 | Major Intrinsic Protein MIP | AT1G31880 | 38.983 | 1.55e-09 | 59.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops6g00079 | - | - | gmx:100778984 | 1577.38 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops6g00079 | 6 | 1894553 | 1900237 | Rops6g00079 | 6 | 1894553 | 1900237 | ECH |