Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00072 ATGGAAGCTACAAGGCGTTGGTTTAATAAATTCAAAGCAAATGATAGAATGAAGTCTTCAAAAAACAAGGAAGCTACAGGCATGGCCAAAGAAGGGTCGAAACCCCCGACAAATGAAGAAGCACCTTCAAATGTGACCAAGCAGAAGGTTGAAGCTGCCAAGCAGTACATAGAAAATCATTATAAAAAGCAGATGCAGAGCTTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAACAACTTGCTTAAGTATTTGGAGATAAAGGAGACGGAATACATGCGCCGTCAGAGACATAAGATGGGGGCCGATGACTTTGAGCCGCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAAGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTTGAACATGTTAAAGCTGAGAGGAACTTACTTGCAGAAGTTGACAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGATGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTAATGCGGAAGGACATACTGACAGAAGATGAGGCCAGGTTCTATGTTGCGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCCGACAACTTGCTACTAGACAGAAATGGTCACATGAAATTATCAGATTTTGGATTATGTAAACCGCTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTGTTGGAAATAACAGAAGTGGAGCCCTTCAAAGTGATGGACGTCCTGTGGCTCCTAAACGAACACAACAGGAGCAACTGCAGCATTGGCAGAAAAATCGGCGAATGCTTGCTTATTCTACAGTTGGAACACCTGATTATATTGCTCCGGAAGTTCTGCTGAAGAAAGGATACGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTCGACTTGTAGAAAGATAGTAAATTGGAGGACTTATTTAAAATTTCCAGAAGAAGCTAAACTATCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTATGTAATGTGGAGCAGAGGATTGGAACCAAAGGAGCCGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATACCTGAGGTCAATGATGAATTAGACACTCAAAATTTTGAGAAGTTTGAAGAGGTGGACAAGCAAACTGAACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGATGCTGCCATCTATAGATATTAACTTTGTTGGCTACACATATAAGAATTATGAAATCATGAATGATAATGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGGCCATCTATTAAAACCCTATTTGATGGTGAATCAGCTATGGCTGCCAATCAACCTGTCAGAGGGAGCTTCTTAAACCTTTTACCTCCTCAAATGGAAGAAGTTCCAGAGAAAAGTGAATCACAATGA 1647 0.408 MEATRRWFNKFKANDRMKSSKNKEATGMAKEGSKPPTNEEAPSNVTKQKVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQNNLLKYLEIKETEYMRRQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVAETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGNNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTYLKFPEEAKLSAEAKDLICRLLCNVEQRIGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDKQTEPSSKAGPWRKMLPSIDINFVGYTYKNYEIMNDNEIPGIAELKKKSTKPKRPSIKTLFDGESAMAANQPVRGSFLNLLPPQMEEVPEKSESQ* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00072 548 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00072 548 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00072 548 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Rops6g00072 548 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Rops6g00072 548 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00072 548 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g00072 548 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Rops6g00072 548 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Rops6g00072 548 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 456 - -
Rops6g00072 548 FunFam Non-specific serine/threonine protein kinase 203 270 - -
Rops6g00072 548 Coils Coil 61 95 - -
Rops6g00072 548 CDD MobB_NDR_LATS-like 53 114 - -
Rops6g00072 548 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Rops6g00072 548 MobiDBLite consensus disorder prediction 1 47 - -
Rops6g00072 548 Gene3D Phosphorylase Kinase; domain 1 90 202 - -
Rops6g00072 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Rops6g00072 548 CDD STKc_NDR_like 117 482 - -
Rops6g00072 548 Gene3D Transferase(Phosphotransferase) domain 1 310 438 - -
Rops6g00072 548 Gene3D Transferase(Phosphotransferase) domain 1 203 281 - -
Rops6g00072 548 FunFam Non-specific serine/threonine protein kinase 90 202 - -
Rops6g00072 548 SUPERFAMILY Protein kinase-like (PK-like) 93 468 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00072 Rops-Chr6 1763305 1781747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00072 1 540 AGC Kinase Gene Family AT4G14350 82.963 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Rops6g00072 Pkinase 7.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00072 K08790 - gmx:100795087 1050.04