Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00071 ATGGATCATGTTATTGGTGGAAAATTCAAACTTGGGAGGAAGATTGGGAGTGGATCTTTTGGGGAGCTTTATTTGGGTGTTAATGTGCAGAGCGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCTCTATGAGTCAAAAATATACATGCTTCTTCAAGGAGGAACCGGCGTACCTCATTTAAAATGGTCTGGAGTTGAGGGTGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGAAAATTCAATCTGAAAACAGTTTTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTATATGCACTCCCGGGGCTTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGATATGCAAGTGTTAATACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCGCTTGGTTATGTGCTAATGTACTTTTTGAGAGGAAGTCTTCCTTGGCAAGGCCTAAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAAATGCTAACTCCAATAGAGGTCTTATGCAAGTCGCATCCATCAGAGTTCACATCTTACTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCTGATTATTCATATCTTAAGAGACTCTTCCGGGATCTATTCATTAGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATGTTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGGAAACCAGTCTTGAACCCTGGACCATCTGGAGAGAGATTAGAACGGCCTTCAGTTGGACAAGAGATTCGGGAAAGATTATCTGGTGCAGTGGGGGCATTTTCAAGAAGGAATAGCTCAGGGCATGGACTGCATAAAGATCATTCCAGGCATAATAGGTCTTCAGATGATGTGCCATCTTCCAAAGATGTGCAACCTGATTCTGACAGGGCTCGTAGTTCTTCTCGCAATGGCAGTGCCTCAAAAAGGCCTGTCATATCAAGCAGCAGACCAAGCTCTTCTGGTGAACCTAGTGAGAACCGTTCCAGTAGATTGGTCTCAAGCAGTGGTCGTCTATCTACTACTCAGAGGGTTCAACCAGGTTTGGAGTCCAAATCATCCTTTACCCGTGCTGCAGGGACAAGAGGTGGTCGTGACGATGCACTCAGGAGCTTTGAGCTCTTGTCAATTGGTACAGGGAAAAGGAAATGA 1392 0.4267 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLESVKTKHPQLLYESKIYMLLQGGTGVPHLKWSGVEGDYNVMVIDLLGPSLEDLFNYCNRKFNLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSHPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGSSSRARPSGKPVLNPGPSGERLERPSVGQEIRERLSGAVGAFSRRNSSGHGLHKDHSRHNRSSDDVPSSKDVQPDSDRARSSSRNGSASKRPVISSSRPSSSGEPSENRSSRLVSSSGRLSTTQRVQPGLESKSSFTRAAGTRGGRDDALRSFELLSIGTGKRK* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00071 463 MobiDBLite consensus disorder prediction 378 438 - -
Rops6g00071 463 FunFam Casein kinase 1-like protein 1 329 - -
Rops6g00071 463 CDD STKc_CK1_delta_epsilon 8 282 - -
Rops6g00071 463 PANTHER CASEIN KINASE-RELATED 9 384 - -
Rops6g00071 463 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00071 463 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Rops6g00071 463 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Rops6g00071 463 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00071 463 SMART serkin_6 9 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00071 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops6g00071 463 MobiDBLite consensus disorder prediction 356 377 - -
Rops6g00071 463 MobiDBLite consensus disorder prediction 299 447 - -
Rops6g00071 463 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops6g00071 463 FunFam Putative Casein kinase I 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00071 Rops-Chr6 1752268 1762245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00071 8 213 MAP Kinase Kinase Kinase AT3G06030 25.926 9.85e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Rops6g00071 Pkinase 2.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00071 K08960 - cave:132177205 827.394