Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00053 ATGGGAATGAGTGTTTTTCGTATCAAGCTCAAGGCATTCAGGGTGAGATGTTTTTTCTTAGGAAAAAGAGGCAGAAAAAGAAATCATGGGACTGCAAACAAGCCTTCATGGATGATGCCAATAACACATGGTCACCATGTGGTGGAGCATCATGTGATCAAAGATGGTTCTGATGACTCGGACTTTGATTCAGTTGTGATACAGAGAGAGCAAATGGATCACACAGAATTGTGGTATTTTGGAATCTTTGATGCTCTAATTGGAGATGGAGTTACCAAATACATGCAATCCCATTTTTTTGACAAGAAGCTCAAAGAGTCTCATATGAGGAGAAAAACCAAAGAAACACTCAAGAGAGCTTACCTAGGTGCTAAAACAAAGATCAGAGAATCACACAAATCAGAGGAAACATGCAGAATAGGTTCAACATCTGTGATGGTGATAAATGGAGAAAAACTTGTGATAGCCAACGTGGGAGATTACAGAACTGTCTTGTGCAGAGATGGTATAGCTTATCAGACAAAGGGCAGATACAATCAATCAGCCAAGAGACATTGGTATCGCAGACTCTTTTCAGGTTATACAACAGGTACAAAGCATTCCAAAGGCTCAGAACTTGTCGTGGGAGGTGAAAGGATCGACTCTGATACTGAATTTTTGATCTTAGCAAGCAATGGCATATGGGAGGTGATGAAGAATCAAGAGGCTGTGAATCTTATCAGGCACATAGAGGATCCACAAGAAGCAGCTGAGTGCTTGGCAAAGGAAGCTCTGATTAGGATGAGCAAAAGCAACATTGCATGCTTAATCATTCGTTTTGATTGA 825 0.4073 MGMSVFRIKLKAFRVRCFFLGKRGRKRNHGTANKPSWMMPITHGHHVVEHHVIKDGSDDSDFDSVVIQREQMDHTELWYFGIFDALIGDGVTKYMQSHFFDKKLKESHMRRKTKETLKRAYLGAKTKIRESHKSEETCRIGSTSVMVINGEKLVIANVGDYRTVLCRDGIAYQTKGRYNQSAKRHWYRRLFSGYTTGTKHSKGSELVVGGERIDSDTEFLILASNGIWEVMKNQEAVNLIRHIEDPQEAAECLAKEALIRMSKSNIACLIIRFD* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00053 274 ProSiteProfiles PPM-type phosphatase domain profile. 59 273 IPR001932 -
Rops6g00053 274 Pfam Protein phosphatase 2C 77 172 IPR001932 -
Rops6g00053 274 Pfam Protein phosphatase 2C 212 266 IPR001932 -
Rops6g00053 274 SMART PP2C_4 49 271 IPR001932 -
Rops6g00053 274 CDD PP2Cc 79 273 IPR001932 -
Rops6g00053 274 SUPERFAMILY PP2C-like 64 274 IPR036457 -
Rops6g00053 274 Gene3D - 52 188 IPR036457 -
Rops6g00053 274 Gene3D - 196 274 IPR036457 -
Rops6g00053 274 PANTHER PROTEIN PHOSPHATASE 63 272 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00053 Rops-Chr6 1397723 1400179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00053 1 273 PP2C-type Phosphatase Gene Family AT3G23360 47.143 2.69e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00053 K19704 - gmx:100794054 460.685