Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00049 ATGGCAGAAACAAAAGAAGGGTCAGGTTCGGAGATGTCTCTGAAGGATCAGGGCAACGAATTTTTCAAAGCAGGCAAGTATCTCAAAGCTGCTGCACTTTACACTCAAGCCATCAAACAAGACCCTTCAAACCCCACACTTTATAGTAATCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTACTAAAGCTCTTGATGATGCCGAAATGACAATAAAATTAAAACCACAATGGGAAAAGGGATATTTCAGGAAGGGATGCATATTGGAGGCCATGAAACGATATGATGATGCTTTAGCTGCCTTTCAGATAGCTTCGCAGTATAACCCACAAAGTCAAGAAGTATCAAAAAAGATAAAGAAGATAAACCAACTAGTGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGCATATGAGATCTAATGTTGACATGGCCAAACATTTAGAGACATTGAAACCTGAAATGTCTGGAAAGTATGGATCTGAAGAATGCTGGAAAGACATGTTCTCATTCCTTGTTGAGACTATGGAGACTGCTGTAAAATTATGGCATGAAACTTCTTCAGTGGATGGTAGAGTTTACTTTCTTATTGATAAGGAAGAGACGCAGAGTGACAAGTATGCCCCAATTGTGAATATTGATAAGGCCTTTGAATCACCGCATACACACAGCAGCTGCTTTTCATTTCTTAGGCAGTATGCTGAGGAGTCTTTCTCCAAAGCAGCCTGCGTAGTGACTCCCAAAAGCATCATTTCTTATCCACAGGTGTGGAAAGGCCAAGGATCAAGGAAGTGGAAGCATGCACAGAATGATGGTTTTTTTGTTCAATTTGAATCACCTTCCCTGCGAAGGCTTTGGTTTATTCCCAGTTCAAATGAAAAGGGACAGGCATTGTGCAGGGACCCAGAGGTTTTGGACATTGGTGCTCATGAAGTTCTTCCCCGCATATTCAAAGAAAAACTGCCTCGTTCTTAG 975 0.4164 MAETKEGSGSEMSLKDQGNEFFKAGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLTKALDDAEMTIKLKPQWEKGYFRKGCILEAMKRYDDALAAFQIASQYNPQSQEVSKKIKKINQLVKDSKRAQEVEHMRSNVDMAKHLETLKPEMSGKYGSEECWKDMFSFLVETMETAVKLWHETSSVDGRVYFLIDKEETQSDKYAPIVNIDKAFESPHTHSSCFSFLRQYAEESFSKAACVVTPKSIISYPQVWKGQGSRKWKHAQNDGFFVQFESPSLRRLWFIPSSNEKGQALCRDPEVLDIGAHEVLPRIFKEKLPRS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00049 324 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Rops6g00049 324 PANTHER TPR REPEAT CONTAINING PROTEIN 8 319 - -
Rops6g00049 324 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Rops6g00049 324 FunFam serine/threonine-protein phosphatase 5 10 124 - -
Rops6g00049 324 Gene3D Tetratricopeptide repeat domain 6 162 IPR011990 GO:0005515
Rops6g00049 324 Coils Coil 51 71 - -
Rops6g00049 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Rops6g00049 324 Pfam TPR repeat 18 58 - -
Rops6g00049 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Rops6g00049 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Rops6g00049 324 SMART tpr_5 79 112 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00049 Rops-Chr6 1334335 1341010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00049 7 105 U-box Gene Family AT3G07370 29.703 6.05e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00049 - - gmx:100790717 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00049 6 1334335 1341010 Rops6g00049 6 1334335 1341010 ECH