Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00048 ATGCATGCTTTGACAGTGATGGGGAAGACAGGCAAATGGCTTACAAACTTGTTGACATGGAAGAAAGACAAAGAAAATGAGAAGGAAAAATGTGGAAGCAACCTGAGTTTGTCAAATGGCACAGAAAATCCAACTACTACTCCAATTTCTTCAACCCCAAAGGAGAAAAGAAGATGGAGTTTCAGGAGATCATCAGCATCCAAGGAAATGAATGTTGCAGAATCAAGTGTCACTGCTTCAGTGACAGTGCAAACTGCCACAGATGCTGAGAATGATCAGAGGAAGCATGCCATGGATGTGGCTGTGATCTGCTTGAATTCTGGTTCCAATGGAGGAATTAGAACAAGTATTGAAGAGGCTGCTGCCATTAAAATTCAATCTGTCTTCAGATCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGATTAGTGAAGTTGCAAGCACTGGTAAGGGGTCATTTGGTGAGAAAACAGGCCACAGATACACTAAGATGCATGCAGGCTTTGGTCATAGCACAAGCCAAAGATTGTGCTCAGAGGGCTCAAATGGCATCAGAAGGAAAGGCTAATCAAAAGCAATCAACCTACAGAAAAACCACAGAGGAGAATTTATTCATGCATATGTATAATGAAATGGACAGAAGCTTGGAAGAGAATGTCAAGATTGTCGAGATGGATGTTTGTGAATCCAAAGGTAACTCAAGAGGCAGAAACAGCACTGCAAATCATGGACATAGAGAATTGTCTGAGCATAGATTTTCTTCATATTATTCACCAAATGATTCATATTCAAAGAAAGAAAACTACAAGGCATCACCTGCACCATCAGCATTGACAGAGTTGAGTCCAAGAGCATGCAGTGGATATTTTGAGGACTGTGCCTTTAGTCCAGCACTGAGGAGTCCCCATTACTACTCAGTTGTGTCAAAAGTAGAGGATTCAAAGCTTCCTTTTGCTTTTTCAAGACCAGCCTATGCAGCATCCATGTCCTATGACTATCCATTATTCCCAAATTACATGGCTAACACAGAATCATCAAGGGCCAAAGTCAGATCACATAGTGCACCAAAGCAAAGGCCAGATTCATATGAGAGGCAACCAAGCCGGCAAAGAGCTTCAGTGGAAGGAAGAAATGTCCCAAGGCCAGTGAGGATGCAGAGATCATCTTCACATTTGTGTGCCACTGCCCAAAACTACCAATATCCATGGTCAATAAAGCTTGACAGGTCCTCAGTTTCACTCAATGACAGTGATTACGGCTCTACAAGTACAGTGCTCACAAACTCTAACTACTGCAGATCTCTTGTTGCACATGATCCTCATGGACATAGGTACTGA 1341 0.4251 MHALTVMGKTGKWLTNLLTWKKDKENEKEKCGSNLSLSNGTENPTTTPISSTPKEKRRWSFRRSSASKEMNVAESSVTASVTVQTATDAENDQRKHAMDVAVICLNSGSNGGIRTSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQATDTLRCMQALVIAQAKDCAQRAQMASEGKANQKQSTYRKTTEENLFMHMYNEMDRSLEENVKIVEMDVCESKGNSRGRNSTANHGHRELSEHRFSSYYSPNDSYSKKENYKASPAPSALTELSPRACSGYFEDCAFSPALRSPHYYSVVSKVEDSKLPFAFSRPAYAASMSYDYPLFPNYMANTESSRAKVRSHSAPKQRPDSYERQPSRQRASVEGRNVPRPVRMQRSSSHLCATAQNYQYPWSIKLDRSSVSLNDSDYGSTSTVLTNSNYCRSLVAHDPHGHRY* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00048 446 SMART iq_5 140 161 IPR000048 GO:0005515
Rops6g00048 446 SMART iq_5 117 139 IPR000048 GO:0005515
Rops6g00048 446 MobiDBLite consensus disorder prediction 351 372 - -
Rops6g00048 446 MobiDBLite consensus disorder prediction 32 54 - -
Rops6g00048 446 Pfam IQ calmodulin-binding motif 145 159 IPR000048 GO:0005515
Rops6g00048 446 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Rops6g00048 446 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Rops6g00048 446 MobiDBLite consensus disorder prediction 28 59 - -
Rops6g00048 446 Pfam Protein of unknown function (DUF4005) 326 378 IPR025064 -
Rops6g00048 446 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Rops6g00048 446 MobiDBLite consensus disorder prediction 231 252 - -
Rops6g00048 446 PANTHER IQ-DOMAIN 5-RELATED 7 376 - -
Rops6g00048 446 Gene3D - 118 171 - -
Rops6g00048 446 MobiDBLite consensus disorder prediction 348 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00048 Rops-Chr6 1317639 1319707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00048 6 436 IQD Protein Family AT4G14750 44.000 1.87e-90 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00048 - - gmx:100817667 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00048 6 1317639 1319707 Rops6g00048 6 1317639 1319707 ECH