Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00039 ATGCCAGTGAGGCAAATGAAAGAGAGCTCAGAGCAACACCTTGTGATCAAAACCCATTTGCAGAACCCCATGAATCCAGCTAAGAAGGTTACTAGAGCTGTCCAAAATGGAAAAGGTCCACCACCACTGCCACAAGAACCCCATAACCAAACTTCACCTCAGGCAAGGACCAAGGGAAGAAGAAGGAGCAGATATGGCAGAAAATCTGATCAAGGAGATGTTTTGATGAGACCCAGTTGCAGACCTTGCACTGTTGTGACAAACACTGCAAATGGACCTGTTGAAAATGGCAGCATCTCTGGTGACATAGAGATGAGTTACCCTACTTCAAGCAAGTCTTTGAACTTTGCTCCTAGGCCAGGATATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGATTTGAACCACTATGATGTCACTATTACACCCGAAGTGTCTTCCAAAGCAGTAAACAGGTCCATCATAGCAGAACTTGTGAGGCTCTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCTTATGATGGCAGAAAAAGTCTGTACACTGCAGGGACACTTCCCTTTTCCTGGAGAGAGTTTAAGATTAAGCTTATAGATGAAGAGGATGGACCTAATGGTCCCAAAAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCACGTGCAAACTTGTATCACTTGGGGCAGTTCCTAGCTGGTAAGCGTGCTGATGCTCCACAGGAGGCACTCCAAATTTTTGACATCGTATTAAGAGAGCTATCATCTAAGAGGTTTTGCCCTGTTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTTGGGGAGGGGTTGGAGTCCTGGTGTGGTTTTTACCAAAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCAGTAGTGGAGTTTGTTGGTCAGCTGTTAGGAAAAGATGTACTGTCGAGGCAATTGTCCGATGCTGATCGTGTTAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACCCACAGAGGGAGTGTTAGAAGAAAGTATCGTGTTTCCGGTTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCCGTTGATGAGAACTCAACTATGAAATCTGTAGTTGAATACTTCCAAGAGATGTATGGCTTCACTATTAAATATACCCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAAGCAAACTATTTACCCATGGAGGCCTGCAAAATTGTCGAGGGGCAACGTTATACTAAAAGGTTGAATGAGAAGCAAATTACCGCTCTCCTGAAAGTTACTTGCCAGAGACCTCGTGATCGAGAAAATGACATTTTGCGGACTGTTCAGCATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATAAGTGAAAAGCTAGCTTCTGTGGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATATCACGATAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATCAATTTTTCAAGAAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCAGGTGGATAAAGCTTTGAAGCATGTTTACCATGTTTCAATGAACAAAACCAAAGGAAAAGAATTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGCTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTCAAGATCACTAAACAGTACTTGGCTAATGTATCTCTGAAGATCAATGTGAAGATGGGAGGTAGAAACACAGTTCTTGTTGATGCCGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATCCTGAAAATGGAGAGGACTCTAGCCCTTCGATAGCAGCTGTAGTAGCATCCCAAGACTGGCCTGAAGTGACGAAATATGCCGGTACAGTGTGTGCTCAAGCACATAGACAGGAACTTATACAAGATTTGTACAAAACTTGGCATGACCCTGTCCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCCTTTAGAAAAGCAACAGGACAGAAGCCACTAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTCGTACAAAAAAGACATCATACTCGATTGTTCGCAAACAATCATAGGGACAGGAGCAGTACAGATAAAAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGTCACCCAACAGAGTTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACAAGTCGTCCAGCTCATTATCATGTTCTTTGGGATGAGAACAACTTCACAGCCGATGGGATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCTGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGTTTCTATATGGAACCAGACCTGCAGGAGAATGGCTCCTCAGGTGGTGGTAGTGGTGGTGGTCATGGTTCCAAGGCAACAAGAGCAGCTGGAGACTGTGGTGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAAAGAGTAATGTTTTATTGTTAA 2946 0.428 MPVRQMKESSEQHLVIKTHLQNPMNPAKKVTRAVQNGKGPPPLPQEPHNQTSPQARTKGRRRSRYGRKSDQGDVLMRPSCRPCTVVTNTANGPVENGSISGDIEMSYPTSSKSLNFAPRPGYGQVGTKCIVKANHFFAELPDKDLNHYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGTLPFSWREFKIKLIDEEDGPNGPKREREYKVVIKFVARANLYHLGQFLAGKRADAPQEALQIFDIVLRELSSKRFCPVGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRVKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHDSGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVDKALKHVYHVSMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGTVCAQAHRQELIQDLYKTWHDPVRGLVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQENGSSGGGSGGGHGSKATRAAGDCGGVKPLPALKENVKRVMFYC* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00039 981 CDD Piwi_ago-like 482 932 IPR045246 -
Rops6g00039 981 Pfam PAZ domain 350 454 IPR003100 GO:0005515
Rops6g00039 981 Pfam Mid domain of argonaute 521 598 IPR032473 -
Rops6g00039 981 Pfam Piwi domain 613 932 IPR003165 GO:0003676
Rops6g00039 981 ProSiteProfiles Piwi domain profile. 612 933 IPR003165 GO:0003676
Rops6g00039 981 ProSiteProfiles PAZ domain profile. 324 438 IPR003100 GO:0005515
Rops6g00039 981 Gene3D - 502 675 - -
Rops6g00039 981 Pfam N-terminal domain of argonaute 128 262 IPR032474 -
Rops6g00039 981 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 108 933 - -
Rops6g00039 981 SMART DUF1785_2 271 323 IPR014811 -
Rops6g00039 981 FunFam Protein argonaute-2 317 443 - -
Rops6g00039 981 SUPERFAMILY PAZ domain 318 478 IPR036085 GO:0005515
Rops6g00039 981 Gene3D - 681 981 IPR036397 GO:0003676
Rops6g00039 981 Pfam Argonaute linker 2 domain 464 510 IPR032472 -
Rops6g00039 981 Pfam Argonaute linker 1 domain 272 321 IPR014811 -
Rops6g00039 981 CDD PAZ_argonaute_like 323 437 - -
Rops6g00039 981 MobiDBLite consensus disorder prediction 18 78 - -
Rops6g00039 981 SMART PAZ_2_a_3 328 460 IPR003100 GO:0005515
Rops6g00039 981 FunFam protein argonaute 10-like 681 981 - -
Rops6g00039 981 Gene3D paz domain 317 442 - -
Rops6g00039 981 FunFam Argonaute 10 502 675 - -
Rops6g00039 981 SUPERFAMILY Ribonuclease H-like 602 934 IPR012337 -
Rops6g00039 981 SMART Piwi_a_2 612 933 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00039 Rops-Chr6 1062787 1072499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00039 1 981 Eukaryotic Initiation Factors Gene Family AT5G43810 82.200 0.0 1661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00039 K11593 - gmx:100816999 1820.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00039 6 1062787 1072499 Rops6g00039 6 1062787 1072499 ECH