Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00027 ATGGTTGGATTGGAACTCATACCCATAGGTACAATTTTGGCTGTTCTAACCAGCCAGGTCTTGAGAACAGCTAATGCAGCAATTGACGTTCTTGTTGATAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTCAAAAAGGCGAGTAATTTGGTTGAGAAGTACAGGAACCGTGGCCGTTTTTACTTACTGGTGAAGTGCCGATACATAGTCAAGGAGGTTGAACAAGTCACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAAGTCAACAGGCTACAGAGCGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGAACCATGGAATTAAGGAGCAGAAACTAGATCAGGCTTTTGCAAATGACATGCTTGAGGAAATAGCAAGGGCAGTTGGGGTGCCAGTGGAGCCTTCAGAGATAAGCAAAGAGCTGGCCAGCATTAGGTGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAAAGAGCTGAAGTTATTTTCTTGGAGCAGATCATTGAGCTACTCTCTCGAGCTGATGCTGCGAGGGATTATGAAGAAGTTAAGAAGCACTACTTTAAAAGGGTTCAGGTAATAGAGCGATACGATTCAACAGAAAAATATATTCCACCACTTAAATCTTTCCTTTGTTGCATAACTGGAGATGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATTGAAGCTTGGTTTGATGATGGCAACAGGACTGATCCTGAAACAAAAGAGGCTCTTGAAGATACTACCTTGAGGTCAAACATTCGGTTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTTGAGATAAGGTCTATCAGAAAAAACCTGTTATCCAATTCTGACTTACTATTGCAAGAATCCCTAAGCCAAATGCAGGCTCTTATAAGAGAAAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTATTATCTTTATCCTTGGGAACACTGATTCTAGAGATGTGAAGAAGCAGATATTGATTACTTTGAAGGATGCTGTCGAGGGACATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGATGGGGTCACATTATTTCATGCTTACAGAGCGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTGCTTCAAGATCGATCTGGCTGGAATAGAAGTTTCTGCCAAAAACTCTCTGAGCATCCCAGTGCATTTCTTTACCTTGTTACCATTCTAAAGGGTCCTGCCAGAAATTCAACTGGGATTGCAGAAAAGATTTTGATGGAGCTTTTTGAAATAGATGAGGAAAACATTTCTGGTGCTGCTAAGTTTGGCTGGTACAAACCGCTTGTTGATCACATGATTCAAGGATCTGAGTCTTCAAGAATGTCAATGGCAAAAGCCATAATTAATTTGGAATTGAAAGATTTAAACTTGAAACTCCTTGGCGAGCAAGGAGTTATACCTCCTTTACTAGAAATGCTATCTGGCGGCATTGAATCAAAAGAATTGTCATTATCAGCCCTGGTTAAACTAGCAGGATTACATGCCAATAAGGGGATCATTGCTGCATCTGGAGGTGTGCCTCTCGTTCTAGATTTAATGTTCTCTAGCAGGATGTGGGCATTCATTACCATTAAATGCTGTGAAATCCTTGAGAAGCTTTCTTCTGATGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGAAAACAACTCGAGTTAGATAACATCATCACCAATTTGCTAGCTCTGCAGCAGAGTCATAACTCAGCTCACAACTTCCGTAAGCCTGCATTACGTGCTCTTCTTGGCATTTGCAAGTTTGAGACTGGTTTAGTTAAGAAGGCAGTTCTAGCAGCTAATGGTGTATCTCTAATCCTTCCCCTTCTTGATGATTCTGACTCAGAAATCAGGGAGACTGCCATAAATCTTCTCTTTCTTTTCTCTCAACATGAACCAGAAGGAGTAGTTGAGTACCTCTTCAGGCCTAGAAGACTGGAAGCTTTAGTTGGATTTCTCGAGAATGATGACAATAATGATGTACAAATGGCTGCTGCTGGTTTACTAGCTAACCTTCCTAAATCAGAACGAGAACTCACTATGAAGTTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTGAGAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCCACAAATATTGAGTCACAGCGTGATTTGGTTAAACGAGGAATATATCCTTTGCTAGTAAATTTTCTCAATACTGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTGTGAGCACTCCAAAGCTCACAGTTGTTTCCAAATCAACTGGTTGCTGGTGTTTTAGATCGTCAAGAGTTCCTTTATGTTCAGCTCATGGGAGTGTATGCAATGTGACTTCCACATTTTGTCTGTTGGAAGCAAATGCATTGCCTGGCTTGATAAAGCTGCTGCAGGAGGAGGTTCATGCAACTGCTTATGAAGCTATACAGACACTTTCCACGTTGGTTTTAGAAGACTTTCCCCATAGAGGAGCTCGTGTCTTGCATGAGTCAAATGCAATGAGACCCCTATTGGAAATTTTGAATTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATACTATGGAACAACAGCTAGATTACGTCTAGTTGGTCTGACTGGCATGAATATATATGGGGATGGCCACCTAAGGAGAAAGGCTGCCAGGGTACTGTCATTGCTTGAACGCTATTCAAAGTCATCGTCATCTGCAATCTCTGGAGTTCTGGAGTGA 3051 0.4127 MVGLELIPIGTILAVLTSQVLRTANAAIDVLVDKESFKVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKASNLVEKYRNRGRFYLLVKCRYIVKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQSEMQRVEFEASQSQLQIVDKLNHGIKEQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRWEKEEAANRKERAEVIFLEQIIELLSRADAARDYEEVKKHYFKRVQVIERYDSTEKYIPPLKSFLCCITGDVMVDPVSLCTGTTCERSAIEAWFDDGNRTDPETKEALEDTTLRSNIRLRESIVEWRELNYCFEIRSIRKNLLSNSDLLLQESLSQMQALIRENSINKDWISIGELTDIIIFILGNTDSRDVKKQILITLKDAVEGHARNKEKVVESQGWGHIISCLQSDSRISKEAIDLLYELLQDRSGWNRSFCQKLSEHPSAFLYLVTILKGPARNSTGIAEKILMELFEIDEENISGAAKFGWYKPLVDHMIQGSESSRMSMAKAIINLELKDLNLKLLGEQGVIPPLLEMLSGGIESKELSLSALVKLAGLHANKGIIAASGGVPLVLDLMFSSRMWAFITIKCCEILEKLSSDDDGIDFFVDGEGKQLELDNIITNLLALQQSHNSAHNFRKPALRALLGICKFETGLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDDNNDVQMAAAGLLANLPKSERELTMKLIDLGGLDAIISILRNGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSVSTPKLTVVSKSTGCWCFRSSRVPLCSAHGSVCNVTSTFCLLEANALPGLIKLLQEEVHATAYEAIQTLSTLVLEDFPHRGARVLHESNAMRPLLEILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARLRLVGLTGMNIYGDGHLRRKAARVLSLLERYSKSSSSAISGVLE* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00027 1016 Coils Coil 69 89 - -
Rops6g00027 1016 CDD MLKL_NTD 20 145 - -
Rops6g00027 1016 SMART arm_5 673 713 IPR000225 GO:0005515
Rops6g00027 1016 SMART arm_5 537 576 IPR000225 GO:0005515
Rops6g00027 1016 SMART arm_5 802 842 IPR000225 GO:0005515
Rops6g00027 1016 SMART arm_5 408 447 IPR000225 GO:0005515
Rops6g00027 1016 SMART arm_5 919 959 IPR000225 GO:0005515
Rops6g00027 1016 SMART arm_5 875 915 IPR000225 GO:0005515
Rops6g00027 1016 SMART arm_5 715 757 IPR000225 GO:0005515
Rops6g00027 1016 SMART arm_5 759 799 IPR000225 GO:0005515
Rops6g00027 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1008 - -
Rops6g00027 1016 SUPERFAMILY RING/U-box 247 329 - -
Rops6g00027 1016 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Rops6g00027 1016 Coils Coil 127 154 - -
Rops6g00027 1016 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Rops6g00027 1016 Gene3D - 854 1012 IPR011989 -
Rops6g00027 1016 Gene3D - 12 123 IPR036537 GO:0007166
Rops6g00027 1016 CDD RING-Ubox_PUB 265 314 IPR045210 -
Rops6g00027 1016 Gene3D - 339 466 IPR011989 -
Rops6g00027 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Rops6g00027 1016 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Rops6g00027 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 337 IPR013083 -
Rops6g00027 1016 SUPERFAMILY ARM repeat 637 1003 IPR016024 -
Rops6g00027 1016 Gene3D - 469 853 IPR011989 -
Rops6g00027 1016 SUPERFAMILY ARM repeat 335 670 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00027 Rops-Chr6 827509 833034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00027 263 973 U-box Gene Family AT1G20780 27.213 2.71e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00027 - - gsj:114377374 1709.12