Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00026 ATGGAGCGACGGCAACCGGCGCTGTCTCCGCCGCCATCGCCGTCGTCGCGCACCATCCTCGGCAAGTACCAACTGACGCGGTTCCTAGGGCGCGGAAACTTCGCGAAGGTGTACCAGGCACTGTCTGTAACTGACGGCGCCACGGTGGCCGTGAAAATGATCGACAAATCCAAAACGGTGGACGCGGCGATGGAGCCTCGAATCGTTCGAGAAATCGACGCCATGCGTCGTCTCCACCACCACCCTAACATCCTCAGAATCCACGAGGTCATGGCCACGAAAACCAAGATCTACCTCATCGTCGACTTAGCCGGCGGTGGCGAGCTCTTCTCCAAGATATCCCGGCGAGGCAGGTTATCGGAGCCGGTGGCGAGGCGATACTTCCAGCAGCTCGTCTCCGCTCTCTGCTTCTGCCACCGAAACGGCGTCGCACACCGCGACCTGAAACCGCAGAACCTCCTCCTCGACGCCAACGGTAACCTCAAGGTCTCCGACTTCGGACTCTCCGCGCTACCGGAGCAGCTTAAGAACGGGCTTCTCCACACGGCTTGCGGAACTCCGGCGTACACCGCGCCGGAGATTCTCTGCCGGGTCAAATACGACGGTTCCATGGCCGACGCGTGGTCCTGCGGGGTAATCCTCTACGTTTTCCTCGCCGGTCACCTTCCATTCGACGACTCCAACATTCCGGCGATGTGCCGGAGGATCCACCGGCGAGATTATCAGTTCCCGGCGGGGGTATCAAAATCAGCAAAATACCTAATCCACCAGCTTCTTGACCCGAATCCGAAGACCCGAATGAGGTTGGAGTCGGTGTTTGAGAACTCGTGGTTTAAAAAATCGTTGAGAGCAACCCCTGAAGAGAGCGTGTTCGAATCGGATTCGTATAACAAATTCTGTTGCGACGGTTACAAGTTGGAAATGAATGCTTTTGATATAATATCCATGTCTTCGGGGTTGGATTTAAGGGGTTTGTTCGAAACGACGTCGGATAATAAGAGGGAGAAGAGGTTCACTTCGGATAAGGAGGTTGGGGTGGTGGAGGAGAAGGTGAAGGAGGTTGGTGGGAGTTTGGGGTTTAGGGTTGCGATTGGGAAGAATGGGGCAATTGGGTTGGGGAAAGGGAAGGTGGCTCTTGTGGTTGAGGTGTTTCAAATTGTGCCTAACTTCTTGTTGGTGGCACTTAAATTTGTTGATGGTGGGTTGGAGTTTGAGCACCTTCATTGGGATGATTGGAAAATTGGACTTCAAGATGTTGTTCTTTCTTGGCATAATAACAATGAATCAACCTTGTCTCTCTGA 1302 0.5399 MERRQPALSPPPSPSSRTILGKYQLTRFLGRGNFAKVYQALSVTDGATVAVKMIDKSKTVDAAMEPRIVREIDAMRRLHHHPNILRIHEVMATKTKIYLIVDLAGGGELFSKISRRGRLSEPVARRYFQQLVSALCFCHRNGVAHRDLKPQNLLLDANGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILCRVKYDGSMADAWSCGVILYVFLAGHLPFDDSNIPAMCRRIHRRDYQFPAGVSKSAKYLIHQLLDPNPKTRMRLESVFENSWFKKSLRATPEESVFESDSYNKFCCDGYKLEMNAFDIISMSSGLDLRGLFETTSDNKREKRFTSDKEVGVVEEKVKEVGGSLGFRVAIGKNGAIGLGKGKVALVVEVFQIVPNFLLVALKFVDGGLEFEHLHWDDWKIGLQDVVLSWHNNNESTLSL* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00026 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 390 - -
Rops6g00026 433 Pfam NAF domain 308 362 IPR004041 GO:0007165
Rops6g00026 433 SUPERFAMILY Protein kinase-like (PK-like) 19 286 IPR011009 -
Rops6g00026 433 FunFam Non-specific serine/threonine protein kinase 304 421 - -
Rops6g00026 433 CDD CIPK_C 309 417 - -
Rops6g00026 433 SMART serkin_6 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00026 433 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Rops6g00026 433 Pfam Protein kinase domain 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00026 433 FunFam Non-specific serine/threonine protein kinase 16 108 - -
Rops6g00026 433 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00026 433 Gene3D Phosphorylase Kinase; domain 1 25 108 - -
Rops6g00026 433 FunFam Non-specific serine/threonine protein kinase 14 302 - -
Rops6g00026 433 Gene3D Transferase(Phosphotransferase) domain 1 109 300 - -
Rops6g00026 433 Gene3D Kinase associated domain 1, KA1 305 421 - -
Rops6g00026 433 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Rops6g00026 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00026 Rops-Chr6 772891 774518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00026 9 426 Miscellaneous Gene Families AT3G23000 57.412 2.26e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops6g00026 Pkinase 1.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00026 K12761 - gmx:100305372 654.44