Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00021 ATGATTTCCTATGTTGTTCAACCTTCTGACAACATATCATCCATTGCTTCCAGGTTTGGATCAAGGGAACAGTCTATAATTGATGCGAATGGTGCCACTCTTCATGATTATGATACCATCTTTGTTCCTGTGACTCGGTTGCCCATTCTTTCACAGCCTGCTGCTGTTCCTTCTTCTCCTCCTACTGCTTCTCCTCCTGCAAGTGGAAGCTCTGATGATAGGACTGGGACTGTTAGAGGACTGGCTATTGGGTTGGGGATTACTGGGTTGTTGTTGATTTTGGTGATTGGGTTGTGGGTTTACAGGGAAGTTGTGTTCAAGGATAGGTTGTGGATGGTCAGAGATGAGGAAAACAAGAAGCAGCAGAACTTGTATATGGGAAGGAAAGAGAGCAAAGGGACGAAGCAAATGGATGTGAAGTTGATGGCTAATGTTTCAGATTGTTTAGACAAGTACAGGGTTTTTGGAATTGAAGAACTTATAGAAGCCACTGATGGGTTTGATGATAATTGCTTGATTCAAGGGTCTGTGTACAGAGGAACAATTGATGGGGAGGTCTATGCAATCAAGAAGATGAAGTGGAATGCCTATGAGGAGCTCAAGATCTTACAGAAGGTAAACCATGGGAATCTGGTGAAGTTGGAGGGATTTTGCATTGACGAAGAGGAAGCTAATTGCTATCTAGTCTATGAATATGTGGAGAATGGATCTCTCTACTCATGGCTACATGAGGATAGAAACGAAAGGCTGAACTGGAGAACAAGGCTGAGAATAGCCATTGACATTGCCAATGGTCTCCAATACATCCATGAGCACACAAGGCCAAGAGTTGTGCACAAAGACATTAAGAGCAGCAACATTCTTCTAGACACCAACATGAGAGCCAAGATTGCCAATTTTGGGCTTGCAAAGTCAGGAATGAATGCCATCACAATGCACATTGTGGGAACACAAGGCTACATTGCCCCTGAATATCTAGCTGATGGTGTGGTCTCAACAAAGATGGATGTGTTTGCTTTTGGGGTTGTGTTGCTTGAACTAATTTCTGGGAAGGAAGCCATTGATGAGGAGGGAAATCTCTTGTCAGCAAATGCCATGAGAACCTTTGATTTGAATAATGAACAACAGACGGTTAGGAAATTGAAGGAGTGGTTGGATAAGGCTATTTTCAAAGAGACATGCTCAATGGAAAGTGTGATGGGTGTTCTTACTGTTGCAATTGCTTGTTTGCATGCAGACCCAACAAAGAGGCCCAGCATAATGGATATTGTCTATGCACTGAGTAAAAGTGAAGATGCAGGCTTTGACAACTCAGATGAAGGGATTGATTCTCCAAGGGTGATGACGGCTAGGTGA 1356 0.4322 MISYVVQPSDNISSIASRFGSREQSIIDANGATLHDYDTIFVPVTRLPILSQPAAVPSSPPTASPPASGSSDDRTGTVRGLAIGLGITGLLLILVIGLWVYREVVFKDRLWMVRDEENKKQQNLYMGRKESKGTKQMDVKLMANVSDCLDKYRVFGIEELIEATDGFDDNCLIQGSVYRGTIDGEVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDEEEANCYLVYEYVENGSLYSWLHEDRNERLNWRTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDTNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFAFGVVLLELISGKEAIDEEGNLLSANAMRTFDLNNEQQTVRKLKEWLDKAIFKETCSMESVMGVLTVAIACLHADPTKRPSIMDIVYALSKSEDAGFDNSDEGIDSPRVMTAR* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00021 451 CDD LysM 2 42 IPR018392 -
Rops6g00021 451 MobiDBLite consensus disorder prediction 53 74 - -
Rops6g00021 451 ProSiteProfiles LysM domain profile. 2 49 IPR018392 -
Rops6g00021 451 SUPERFAMILY Protein kinase-like (PK-like) 153 427 IPR011009 -
Rops6g00021 451 FunFam PTI1-like tyrosine-protein kinase 3 233 440 - -
Rops6g00021 451 SMART serkin_6 167 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00021 451 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 429 - -
Rops6g00021 451 Gene3D Phosphorylase Kinase; domain 1 136 232 - -
Rops6g00021 451 Gene3D LysM domain 1 49 IPR036779 -
Rops6g00021 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Rops6g00021 451 ProSiteProfiles Protein kinase domain profile. 149 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00021 451 Pfam LysM domain 4 42 IPR018392 -
Rops6g00021 451 Pfam Protein kinase domain 176 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00021 451 Gene3D Transferase(Phosphotransferase) domain 1 233 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00021 Rops-Chr6 698025 701339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00021 1 428 Receptor kinase-like Gene Family AT2G33580 34.498 5.11e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Rops6g00021 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00021 - - lang:109352405 697.967