Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00018 ATGGAAAAAACAGTGGCATATGAGGATGGTCTCAACCTCAAGGCAACAGAACTTAGATTGGGATTGCCAGGGACAGAGGAAAAGGAGGAGAAAACCATGACTGGTGTTAAAAACAACAAAAGGCAATTGCCTGAATCTTCTGAAGAGTCTGTTTCCATTTCAAAGGCCTCACATGTGGAGAGTGATGCAGCCCCTCCTCCTGCCAAGGCAAAGATAGTGGGATGGCCACCAATCAGATCCTACAGGAAAAACAGCTTGCAGGAGGCTGAGGGTGGTGGGATCTATGTGAAAGTGAGCATGGATGGAGCCCCATACCTAAGAAAGATTGACTTGAAGGTCTATGGGGGGTATCCAGCACTCCTCAAAGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAAGGATCTGAATATGCACCCACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGAGTTCCTGCAAAAGGCTAAGAATCATGAAAGGCACAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA 573 0.459 MEKTVAYEDGLNLKATELRLGLPGTEEKEEKTMTGVKNNKRQLPESSEESVSISKASHVESDAAPPPAKAKIVGWPPIRSYRKNSLQEAEGGGIYVKVSMDGAPYLRKIDLKVYGGYPALLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMSSCKRLRIMKGTEARGLGCGV* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00018 190 Gene3D - 87 190 - -
Rops6g00018 190 MobiDBLite consensus disorder prediction 21 36 - -
Rops6g00018 190 FunFam Auxin-responsive protein 88 190 - -
Rops6g00018 190 MobiDBLite consensus disorder prediction 21 67 - -
Rops6g00018 190 MobiDBLite consensus disorder prediction 37 57 - -
Rops6g00018 190 SUPERFAMILY CAD & PB1 domains 83 179 - -
Rops6g00018 190 ProSiteProfiles PB1 domain profile. 93 180 IPR000270 GO:0005515
Rops6g00018 190 Pfam AUX/IAA family 50 187 IPR033389 -
Rops6g00018 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 184 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00018 Rops-Chr6 599598 601072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00018 96 189 B3 DNA Binding Superfamily AT4G23980 34.043 2.71e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops6g00018 AUX_IAA 1.5e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00018 K14484 - gmx:100800212 300.827