Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00008 ATGGATCGCTTTTCTCCTGAAAAACTTCTGGGTGAGATTTTCTGGGATGAACCACTTTCAGCTACAAATCAAAGTGATCTTTTTCAGTATTCCCAGATCATGAGGACTGAAAATTGTCCCCCCAGAAATCAAAGGGCTTTTGTGCAATATAGCGATCTACCCACAATTAAGTTTGGGGAAGAAAGTTCTCTAAACGGATCGAATTCCCAAACCATGAGTAAGAGAATGCTTGCGTTCTTGAGAAAAAATAGGCCTGCAGAGAGAATTAAGGTAGCAGAGTATGAAAGAGAACGTAGTTTCAGGCACATGATTAATGAAAGAATGAGGAGGCAGAGGCAGAGGCAGTGTAGCTTGACCCTGCATTCAATGTTACCCCATGGAACCAAAACAGATAATAATTCCATAGTTCAAATGGCAGCCAAGGAGATTCAACGTCTACAAGGATGCAGAGAGGAGTTGCAGCGGAAAATTTTGGTGCTTGAAGCGGTTGAGAGCAACAAAGTTGGGGGGAACAAAGTTCAATATATAAGAGTGCTGAATCCTATATCTGGAATTGATTCTGTAGTGGAGACCCTCAAATGTTTGAAAGGCCATGGAGTGGATACCAGAAGCATCAAATCAAATTTCTCCCGGCAAGAGTTGTTTGCAGTGTTAGAGACCGAAACCGAGATTGCAGATACTGATGTGGAAAGGGCTATTCAGAGAACACTTGATGAACTTGAGTGGAAGCTTAATTCTCATGTCCTGGAAGGTTCTGAAAAGCAAAGATTAGAATATGAAGATTCAGACCGAATTTAG 798 0.416 MDRFSPEKLLGEIFWDEPLSATNQSDLFQYSQIMRTENCPPRNQRAFVQYSDLPTIKFGEESSLNGSNSQTMSKRMLAFLRKNRPAERIKVAEYERERSFRHMINERMRRQRQRQCSLTLHSMLPHGTKTDNNSIVQMAAKEIQRLQGCREELQRKILVLEAVESNKVGGNKVQYIRVLNPISGIDSVVETLKCLKGHGVDTRSIKSNFSRQELFAVLETETEIADTDVERAIQRTLDELEWKLNSHVLEGSEKQRLEYEDSDRI* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00008 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 161 IPR036638 GO:0046983
Rops6g00008 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 146 IPR011598 GO:0046983
Rops6g00008 265 Coils Coil 136 156 - -
Rops6g00008 265 Gene3D - 87 162 IPR036638 GO:0046983
Rops6g00008 265 SMART finulus 103 152 IPR011598 GO:0046983
Rops6g00008 265 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 12 239 IPR044658 -
Rops6g00008 265 Pfam Helix-loop-helix DNA-binding domain 101 147 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00008 66 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 42.945 4.13e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g00008 HLH 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00008 - - gmx:100815874 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00008 6 321292 323045 Rops6g00008 6 321292 323045 ECH