Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00007 ATGGCCCCATCACCACCATCTCTGGTGTTTACAGTGCGGAGGCGTAAGGCGGAGCTGGTAGCTCCAGCGAAACCCACCCCTCGTGAGGTGAAATTGCTCTCAGACATAGATGACCAAGATGGCCTACGTTTCCAAATTCCAGTGATACAGTTCTATCGCCACGATCCATCAATGGCAGGGAAAGACCCTGTTGAGGTCATTAGAAAGGCACTGGCTAAAACACTTGTGTTTTACTATCCGTTTGCAGGTAGGCTCAGGGAAGGGCCTGGGCGAAAACTAATGGTGGATTGTACTGGGGAGGGTGTTTTATTCATTGAGGCAGATGCTGATGTTACGCTTAAGCAATTTGGTGATGCTCTTCAACCTCCCTTTCCATGCTGGGAAGAGCTCCTTTATGATGTTCCTGATTCCGGAGGAGTACTTAACACTCCCCTGCTGCTTATACAGGTAACACGGCTGAAGTGCGGTGGTTTCATTTTCGCTCTCAGATTGAACCACACCATGAGCGATGCAGCTAGTTTGGTCCAATTCATGAGTGCGGTAGGTGAAATAGCTCAGGGGATGTGCGAACCTTCAATCCTACCAGTGTGGCGCAGAGAGCTTCTAAATGCAAGGGATCCACCAAGAGTGACATGTACCCATCGTGAATACGAACAAGTACTCGACACCAAGGGAACCATCATCCCGTTAGACGACATGGCCCATCGCTCTTTCTTCTTTGGTCCCACTGAGGTAGCTGCAATTCGTAGTATCCTTCCTCCCCACCAACGTCGATGCTCCAATTTTGAAATCCTCACTGCATGCCTTTGGCGTTGCCGCACATTAGCATTGCAACCAGACAGTGATGAGGAGGTTCGCATAATTTGCATTGTTAATGCACGTGGCAAGTTTGACCCTCCATTACCGAATGGTTATTATGGCAACGCTTTTGCATTTCCTGTTGCGGTTACCACTGCAGGGAAGCTATGTGAAAGTCCATTGGGATATGCACTGGAGCTAGTGAGGAAAGCAAAAGCTGATGTGACTCAGGAGTATATGCATTCATTAGCAGATTTAATGGTCATCCAGGGACGACCTCACTTTACTGTTGTAAGATCCTATCTTGTGTCGGATGTAACACGTGCTGGGTTCGGAGAGGTTGACTTTGGGTGGGGGAAGGCTGTTTATGGAGGACCTGCCAAGGGAGGAGTTGGAGCCATACCTGGTGTGGCAAGCTTTTACATACCCTTTAAAAATGCTAAAGGAGAGGAAGGTCTAGTGATACCGGTTTGTTTACCATCTGAAGCCATGGAGAGGTTCGTAAAAGAGTTGGATCGCATTCTTAAGAGCCATATCCAACCTGCTAGGGGCGGTCCAAACTCTGGTTTTATCGTTTCTTCGTTGTAG 1386 0.4834 MAPSPPSLVFTVRRRKAELVAPAKPTPREVKLLSDIDDQDGLRFQIPVIQFYRHDPSMAGKDPVEVIRKALAKTLVFYYPFAGRLREGPGRKLMVDCTGEGVLFIEADADVTLKQFGDALQPPFPCWEELLYDVPDSGGVLNTPLLLIQVTRLKCGGFIFALRLNHTMSDAASLVQFMSAVGEIAQGMCEPSILPVWRRELLNARDPPRVTCTHREYEQVLDTKGTIIPLDDMAHRSFFFGPTEVAAIRSILPPHQRRCSNFEILTACLWRCRTLALQPDSDEEVRIICIVNARGKFDPPLPNGYYGNAFAFPVAVTTAGKLCESPLGYALELVRKAKADVTQEYMHSLADLMVIQGRPHFTVVRSYLVSDVTRAGFGEVDFGWGKAVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPVCLPSEAMERFVKELDRILKSHIQPARGGPNSGFIVSSL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00007 461 Gene3D - 11 219 IPR023213 -
Rops6g00007 461 Gene3D - 223 437 IPR023213 -
Rops6g00007 461 PANTHER ACYL TRANSFERASE 4 10 440 - -
Rops6g00007 461 Pfam Transferase family 12 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00007 Rops-Chr6 243571 247292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00007 12 440 Monolignol Biosynthesis Gene Families AT5G48930 29.821 3.60e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00007 K19861 - gmx:100797017 823.928