Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00004 ATGGGAACAGCATCCACTTGCTTCTTCTGCGGTGCAAAAGGGAAACTGGGTGTTGCAAGTGAGCTTTTCCGTTGTAATGCCTCTTATGTGCCCTTTTCTTCATTTGGGTCATTCTGCCTATTAACACGTAATAATACCAATACCATGTCCATGTGCTCTTATCGGCTCATTCGAAACGCCACTAACAGCAGCAGTGAAACTAAGCTTCCCAGTTATGCCAAAAGAAGAAGAAGAAGAAGGAGTGGCTTTAATGAAACAGGGTCTTCTTCTCAGTCTCAGCTGCAAAGCCAAAGCCAACCCTATGAGAATGGAGACCCAGTTGGAAGGAAAGATCTTGGGAAGAGTGTGGTGAGGTGGATTCATCATAGCATGAGGGCTATGGCATCTGATTTTGCTTCAGCAGAGTTACAGGGAGAGTTGGAGTTCTCAGAGCTGAGGCAGCGCATGAAACCAGGTCTCACTTTCATTATCCAGGCTCAGCCATATCTGAATGCGGTTCCTATGCCCCTTGGCCTTGAAGTTCTCTGTTTGAAGGCCTCCACCCACTATCCCACTCTGCTCGACCACTTTCAGAGGGAGCTACGTGACGTTCTGCAAGACCTGCAGAGTAAATCCTTGGTTCAGGATTGGCGTGACACTGAATCCTGGAAACTGCTTAAGGAGCTCGCCAATTCAGCCCAGCATAGGGCAGTTGCGAGAAAGATAACGCAGCCCAAGACTGTCCAAGGCGTTTTAGGAATGGACATTGAAAAGGTCAAAGCAATACAGCACAGGATTGATGAATTCACCAACAGCATGTCAGAACTACTCCGAATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAGACCAGATGATACTTCTGATTCACCAAAACCGATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGTAATTTAAACGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGAACCACCGGTTGCCACCTACTACACTTTCACCAGGAGACATGGTTTGTGTGAGAACGTGTGACAGCAGGGGTGCAGTTACAACTTCTTGCATGCAAGGATTTGTGAACAATCTTGGGGATGATGGCTATAGTATTACTGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCTGACACACTTACCTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAGAAAAATGGTTTACGGAAGAAGAATCCTTCAATTTTTGTTGTTGCTACTCTGTTTGGAGGTGGAGAAGATGTTGCATGGCTTGAAAATAATAATTTAGCTGACTGGGCAGAAGAAAATTTGAATGGAATATTAGGAAGTGAAACCTTTGATAATTCTCAGCAGAGAACAATTGCACTAGGTTTGAATAAGAAGAGGCCTGTATTGGTTATCCAAGGGCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGCATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTAGGATTAAATATTGTGCGAGTCGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCCTTGGGAGAAATTGTAAATGCGAAGCTTGCGATTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGGAAGGATCTAAGACATTGTTTAAGGGATGATTCATTAGCTGCGGGCATACGCCAACTTCTGAAACAGCTAGGAAGGTCACTGAAGAAAAAGGAAAAGCAGACCATGGATGAAGTTCTATCTAGTGCTCAGGTTGTACTTGCCACCAATACTGGAGCTGCTGATCCTATGATTCGAAGGCTAGGTACTTTTGACCTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTACAGGGAAAGCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCTTTAGATGGTGGTCTAGGAATATCTCTACTGGAGAGAGCTACAACTTTGCATGAAGGGATTCTCACCACCAGGTTAACAACTCAATACCGTATGAACAATGCAATTGCTAGTTGGGCTTCTAAGGAGATGTATGGAGGATTGTTGAATACCTCTGAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCCTTTGTTAAGCCTACATGGATAACACAGTGCCCATTGCTATTGCTTGATACTAGAATGCCATATGGAAGTCTGTCAGTTGGTTGTGGAGAGCATCTAGACCCAGCTGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGGCATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCAACTGCTATTGTAGTACAATCCCCTTATGTTGCTCAGGTACAACTTTTGAGGGACATGCTTGATGAGTTTCCAGAAGCTGCAGGTACTGAGGTTGCCACAATTGATAGTTTTCAAGGTCGGGAAGCTGATGCTGTAATTTTATCCATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTTGGGGATAGCAGAAGAATCAATGTTGCCACCACAAGAGCACGCAAACATTTAGCTGTGGTATGTGACAGCTCAACTATATGCCACAATACCTTTCTAGCAAGACTTATGCGTCACGTTCGACGATTTGGTAGGGTGAAGCATGTAGAACCAGGTAGTTTTGGCGGGTATGGGCTTGGTATGAATCCAATATTACCTTCCATTAATTAG 2871 0.4417 MGTASTCFFCGAKGKLGVASELFRCNASYVPFSSFGSFCLLTRNNTNTMSMCSYRLIRNATNSSSETKLPSYAKRRRRRRSGFNETGSSSQSQLQSQSQPYENGDPVGRKDLGKSVVRWIHHSMRAMASDFASAELQGELEFSELRQRMKPGLTFIIQAQPYLNAVPMPLGLEVLCLKASTHYPTLLDHFQRELRDVLQDLQSKSLVQDWRDTESWKLLKELANSAQHRAVARKITQPKTVQGVLGMDIEKVKAIQHRIDEFTNSMSELLRIERDAELEFTQEELDAVPRPDDTSDSPKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDSRGAVTTSCMQGFVNNLGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSIFVVATLFGGGEDVAWLENNNLADWAEENLNGILGSETFDNSQQRTIALGLNKKRPVLVIQGPPGTGKTGLLKQLIACAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLGEIVNAKLAIFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQTMDEVLSSAQVVLATNTGAADPMIRRLGTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALDGGLGISLLERATTLHEGILTTRLTTQYRMNNAIASWASKEMYGGLLNTSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCGEHLDPAGTGSFYNEGEAGIVLQHVFSLIYAGVSPTAIVVQSPYVAQVQLLRDMLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVATTRARKHLAVVCDSSTICHNTFLARLMRHVRRFGRVKHVEPGSFGGYGLGMNPILPSIN* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00004 956 CDD SF1_C_Upf1 732 928 IPR047187 -
Rops6g00004 956 Gene3D - 299 416 - -
Rops6g00004 956 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 136 939 - -
Rops6g00004 956 Pfam AAA domain 708 911 IPR041679 -
Rops6g00004 956 Gene3D - 730 938 IPR027417 -
Rops6g00004 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 919 IPR027417 -
Rops6g00004 956 CDD DEXXQc_SMUBP2 482 731 - -
Rops6g00004 956 Pfam AAA domain 482 698 IPR041677 GO:0004386
Rops6g00004 956 SMART ultradead3 478 730 IPR014001 -
Rops6g00004 956 FunFam DNA-binding protein SMUBP-2 isoform X2 285 416 - -
Rops6g00004 956 Coils Coil 583 603 - -
Rops6g00004 956 Gene3D - 267 714 IPR027417 -
Rops6g00004 956 MobiDBLite consensus disorder prediction 65 109 - -
Rops6g00004 956 MobiDBLite consensus disorder prediction 84 103 - -
Rops6g00004 956 SMART AAA_5 497 712 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00004 Rops-Chr6 140517 158197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00004 468 671 Core DNA Replication Machinery Family AT1G08840 26.214 9.62e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00004 - - gmx:100799347 1561.97