Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02248 ATGGCTTCTCATATGAAAGCTTGGGTCTACTCAGAATATGGGAACATACAAGAGATTCTCAAATTTAATACTAATGTGCCTATACCAAACATCAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCGGCCCTTAATCCTGTAGATTATAAGAGGGCTTTGGGGTATTTCAAAAACATAGATTCTCCTTTACCTACTATTCCAGGGTATGATGTTGCTGGTGTGGTGGTTAGAATTGGAAGTAAAGTGAGGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAGTGAGCATGCTATTGATCATCCAACCACAACTGGGTCTTTGGCAGAGTATACTGTTGCTGAAGAGAAAGTATTGGCTCACAAATCCTCCAATTTGAGTTTCATTGAAGCTGCTAGTCTCCCTTTGGCAATCATCACTGCTTATCAAGGACTTGAAAGAGTTGAGTTTTCTGCTGGCAAGTCTATACTTGTTCTTGGAGGTGCTGGAGGAGTTGGATCCCTTGTTATTCAGCTAGCCAAGCATGTTTTTGGCGCATCTAAGGTAGCAGGTACTGTTAGTACTGCTAAACTTGAATTGTTGAGGAACTTGGGAGCAGATTTACCTATTGATTATACAAAGGAGAATTTTGAAGAACTGTCAGAAAAGTTTGATGTAGTGTATGATGCAGTAGGGCAGAGTGAGAGAGCATTGAAGGCTGTTACAGAAGGGGGCAAAGTTGTGACAATTCTGCCACCTGGAAGTCCACCAGCTATCCCATTTGAACTCACTTCAGATGGGGCTGTGTTAGAGAAACTACAACCCTACTTGGAGAGTAACAAAGTGAAGCCAATACTGGACCCTAAGAGCCCCTTTCCATTTTCTCAGACTGTGGAAGCATTTTCCTACCTCAAGACTAATAGAGCCATTGGGAAAGTAGTCATCTATCCTATTCCATGA 945 0.4201 MASHMKAWVYSEYGNIQEILKFNTNVPIPNIKEDQVLIKVVAAALNPVDYKRALGYFKNIDSPLPTIPGYDVAGVVVRIGSKVRKFKVGDEVYGDISEHAIDHPTTTGSLAEYTVAEEKVLAHKSSNLSFIEAASLPLAIITAYQGLERVEFSAGKSILVLGGAGGVGSLVIQLAKHVFGASKVAGTVSTAKLELLRNLGADLPIDYTKENFEELSEKFDVVYDAVGQSERALKAVTEGGKVVTILPPGSPPAIPFELTSDGAVLEKLQPYLESNKVKPILDPKSPFPFSQTVEAFSYLKTNRAIGKVVIYPIP* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02248 314 Pfam Alcohol dehydrogenase GroES-like domain 34 96 IPR013154 -
Rops5g02248 314 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 155 176 IPR002364 GO:0008270|GO:0016491
Rops5g02248 314 SUPERFAMILY GroES-like 4 162 IPR011032 -
Rops5g02248 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 128 253 IPR036291 -
Rops5g02248 314 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 314 IPR044626 GO:0016628
Rops5g02248 314 CDD MDR_like_2 5 310 - -
Rops5g02248 314 Gene3D - 12 310 - -
Rops5g02248 314 Pfam Zinc-binding dehydrogenase 199 310 - -
Rops5g02248 314 SMART PKS_ER_names_mod 14 310 IPR020843 GO:0016491
Rops5g02248 314 Gene3D - 147 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02248 Rops-Chr5 48976699 48978469 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02248 61 224 Monolignol Biosynthesis Gene Families AT1G72680 27.604 5.35e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02248 K18980 - gmx:100791274 530.791