Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02244 ATGGTGAATGCTACTTCAAACATGAATTCTAAGACACTATTTTATGTACTGGGGTGTTTCAATCTGTGTGTGGCATGTACATTCATTCAAGTTTCATGTGGGAATGGATTTAACTCAAGTAGCAAATGTTGGTTCCCAGCAATTTACAACTTTGGAGACTCAAATTCAGACACTGGAACAGTATCTGCAGCATTTACAGGAGTGAATGCTCCTAATGGCATAAGCTTCTTTGGAAGCCTCTCAGGAAGAGCTTCTGATGGCCGTCTCATTATAGATTTTATAACTGAAGAATTGAAGCTTCCATACCTTAGTGCATATTTGAACTCAATTGGATCCAATTACAGGAATGGTGCAAACTTTGCCGCAGGAGGTGCATCAATTCGTCCTGGTGGTTATAGTCCATTCCATCTTGGGCTTCAAGTATCTCAGTTCATACAGTTCAAGTCCCACACTCAGCTTCTCTTCAATCTGCTCTCTGATAACAGGACAGAACCATCTTTTAAAAGTGGTCTTCCAAGGCCTGAGGACTTCTCCAGGGCCCTTTACACCTTTGATATTGGACAAAATGATCTTGCCTCTGGTCTTCAGCACAGTTCTGAGGAACAAGTTCGAAGTTCTATTCCTGAAATTTTGAGCCAGTTTTCCCAGGCAGTGCAGCAACTATACAATGAAGGGGCAAGAGTGTTTTGGATTCACAATACAGGTCCACTTGGATGCTTGCCCTATAGTTACATCTATTATAGTCCTAAGGAAGGTAACCTGGATGCAAATGGCTGTGTGAAACCTCAGAATGAGATTGCTCAGGAATTCAATAGGCAACTCAAGGACCAAGTGTTTCAGCTAAGGAGAAAGTTCCCACTAGCCAAATTTACATATGTTGATGTGTATAAGGCCAAATATGAACTAATCAGAAATGCAACGAACCAAGGTTTTGTCAGTCCATTGGAGTTCTGCTGTGGCAGTTACTATGGTTACCACATAAACTGTGGGAAGAAAGCCATAATAAATGGAACTGTTTATGGTAATCCATGCAAAAATCCTTCTCAACATGTTAGCTGGGATGGCATACACTACTCCCAAGCAGCAAACCAATGGGTTGCTAAACACATTCTCTATGGCTCCTTGTCTGACCCACCAATTCCAATTGGGCAGGCATGTTTCTAA 1164 0.4167 MVNATSNMNSKTLFYVLGCFNLCVACTFIQVSCGNGFNSSSKCWFPAIYNFGDSNSDTGTVSAAFTGVNAPNGISFFGSLSGRASDGRLIIDFITEELKLPYLSAYLNSIGSNYRNGANFAAGGASIRPGGYSPFHLGLQVSQFIQFKSHTQLLFNLLSDNRTEPSFKSGLPRPEDFSRALYTFDIGQNDLASGLQHSSEEQVRSSIPEILSQFSQAVQQLYNEGARVFWIHNTGPLGCLPYSYIYYSPKEGNLDANGCVKPQNEIAQEFNRQLKDQVFQLRRKFPLAKFTYVDVYKAKYELIRNATNQGFVSPLEFCCGSYYGYHINCGKKAIINGTVYGNPCKNPSQHVSWDGIHYSQAANQWVAKHILYGSLSDPPIPIGQACF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02244 387 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 23 379 - -
Rops5g02244 387 Coils Coil 386 387 - -
Rops5g02244 387 Pfam GDSL-like Lipase/Acylhydrolase 48 370 IPR001087 GO:0016788
Rops5g02244 387 Gene3D SGNH hydrolase 35 373 IPR036514 -
Rops5g02244 387 CDD SGNH_plant_lipase_like 46 374 IPR035669 -
Rops5g02244 387 SUPERFAMILY SGNH hydrolase 177 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02244 Rops-Chr5 48870594 48873259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02244 45 371 Pollen Coat Proteome AT1G75910 28.655 1.74e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02244 - - gmx:100782272 673.7