Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02228 ATGGACAAAAAACCGTGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGGCCATGGACCATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCCTTAGCCAAAGCTGCTGGTCTTAAACGTACTGGAAAAAGTTGCCGACTCCGGTGGCTAAATTACCTTCGTCCTGATGTTAGAAGAGGGAATATTACACCTGAGGAACAGCTTTTGATCATGGAACTTCATGCAAAATGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTTCCTGGTAGAACTGACAATGAGATTAAGAACTTCTGGAGGACTAGGATTCAGAAGCACATTAAGCAAGCTGAGAATTTCCAACAACAGAGTTCTGAGATAAATGATCAGCAAACAAGTACTAGCCAAGTGTCCACCATGGCAGAGCCCATGGAGACCTATTCTCCACCCTCATATCAAGGAAATTTAGAGCCATTTCCAACTCAATTCCCCACAATCACTGACCAATCAAGTTGTTGTCCCAATGACAACTCATATTGGAGCATGGAAGATTTCTGGTCTATGCAATTACTGAATGGGGATTAA 597 0.4238 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAENFQQQSSEINDQQTSTSQVSTMAEPMETYSPPSYQGNLEPFPTQFPTITDQSSCCPNDNSYWSMEDFWSMQLLNGD* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02228 198 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Rops5g02228 198 Gene3D - 16 68 - -
Rops5g02228 198 SMART sant 15 65 IPR001005 -
Rops5g02228 198 SMART sant 68 116 IPR001005 -
Rops5g02228 198 CDD SANT 73 112 IPR001005 -
Rops5g02228 198 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Rops5g02228 198 FunFam Myb-related protein 305 73 141 - -
Rops5g02228 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Rops5g02228 198 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Rops5g02228 198 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Rops5g02228 198 CDD SANT 18 63 IPR001005 -
Rops5g02228 198 Coils Coil 114 134 - -
Rops5g02228 198 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 138 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops5g02228 198 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Rops5g02228 198 Gene3D - 73 144 - -
Rops5g02228 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Rops5g02228 198 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02228 Rops-Chr5 48537159 48540355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02228 10 198 MYB Transcription Factor Family AT3G01530 60.417 1.07e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g02228 Myb_DNA-binding 6.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02228 K09422 - gmx:778046 367.851