Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02221 ATGGCCGCCACAGCAACTGCCTCTTCCTCTTCAGTGGGTCCACGATATGCACCACCTGACCCGACACTTCCTAAGCCATGGAGGGGTCTTGTGGATGGCAAGACTGGGTATCTTTATTTCTGGAATCCTGAGACTAACGTTACCCAGTATGAGAGGCCTTCAAGCTCAGCTGCCCCACCAAAGTCTTCAGTGCCTAGTTCTTCTGTCCAGGTTCAACAATCATCTCAAGGGCTGCAGCGTGGTCGCAGTCCTGATTTGAATGATAGGTATGATAGAAATGGAAGTGATGTGTCAAGTGAAGGTGGATCACGGAACCATCAGAGTTCCAAAGGTGGAAGTTATGGTTCTCATAATGTTCTAAATGGAACACATGTTGCTGGAAATGTTAGTTCTTCTATCAGAGGTCATGGTGCATCTGATGCTGGAGCAGGATTATCTCCAGAGTCTTATCGACGTCGGCATGAAATAACTGTTACTGGAGATAATGTGCCTCCACCTCTTACATCATTTGGGTCTACTGGCTTTCCTTCTGAGCTTCTTAAAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCTATTGCTAAAACAGGTTCTGGGAAAACCTTGGGGTATTTAATCCCGGCATTTATTCACTTAAAGCGCTGTGGTAATAACTCCAAAATGGGCCCCACTGTGTTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCGAGATCATCGAGAATTTCTTGTACATGTTTGTATGGAGGAGCGCCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTTCATCAGGTCTCTTACCTTGTGCTAGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTAAATGAGGTGCCTGCTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCGGCTGATCTGCTGGTTAATCCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTATTGGCACCAATGGAGAAACAACGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGCAGTCTTTCACGACAGTTTGGAGCTGCCGTTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAATCAGTTTCGTACTGGGAGGTCTCCTGTGCTTGTAGCCACAGATGTTGCGGCTCGAGGACTGGACATCAAAGACATTAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGAAGGGCTGGAGCCACTGGTATAGCTTACACTTTCTTAGGGGACCAGGATGCTAAATTTGCTTCAGATCTCATCAAAGTCTTGGAAGGTGCAAACCAACGAGTCCCTCCAGAACTTCGTGATATGTCATCACGGGGTGGTGGGATGGGCAGATCCAGACGATGGGGCTCTGGTGGCCGTGGTGGACGCGGTGACTCTGGATATGGTGCGAGGAATTATGACTCTGGATATGGTGGTAAGGGTAATGATGCAGGATATGGTGGAAGAGGTAGTGATTCAAGTTATGGAGGAAGGGGGACTGCTGCTTCTGGCAGAGGTGGAGGCCGTGGATTTGACTTTGACACAGAGAGGAATGATCGTGGTCGAAGCCCTGACAGAGGATCTAGTTGGAGTGATCGCTATAGAAATGTCAACCGTGATCGGAGCCGTAGTCATAGCCCTGACAAGGCTGCACCGAATCAACATAACCAGGTCAGCTTTCACAAAGCTATGATGGAACGCAGCGGAGGGGATAGTGATCGCCACAGGAGCGTTAACCGAGACCGAAGTTGCAGTCCTCCTTGTAAACAGGAGAGGGCCCCAGCAGTTCGTGAACGATCCCCAGTTTACAGTTTTCATCAATCCCTGATGGGACAAGGGCTATCATCCTCTTCGTCTCAACGACAGCGTGTCCCTTACAATGAAGAGAGTTGTAAAGAGGAAAAAAAATCAAGATATGCACGTAGTCCTCACCGAAGCTCACCATCCTCCCCTGGTGGAGGTAGGTCTAACAATAGTACTCAGAAAGATTGGGCAGGTGATGGAAAATATGGTGGATCTCATTCTGCTTACAATGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATAGGTCGAGATGATCCCATATATCAAAGTGTGGATTAG 2424 0.4707 MAATATASSSSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSVPSSSVQVQQSSQGLQRGRSPDLNDRYDRNGSDVSSEGGSRNHQSSKGGSYGSHNVLNGTHVAGNVSSSIRGHGASDAGAGLSPESYRRRHEITVTGDNVPPPLTSFGSTGFPSELLKEVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRCGNNSKMGPTVLVLSPTRELATQIQDEAVKFARSSRISCTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLAPMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARSLSRQFGAAVIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGIAYTFLGDQDAKFASDLIKVLEGANQRVPPELRDMSSRGGGMGRSRRWGSGGRGGRGDSGYGARNYDSGYGGKGNDAGYGGRGSDSSYGGRGTAASGRGGGRGFDFDTERNDRGRSPDRGSSWSDRYRNVNRDRSRSHSPDKAAPNQHNQVSFHKAMMERSGGDSDRHRSVNRDRSCSPPCKQERAPAVRERSPVYSFHQSLMGQGLSSSSSQRQRVPYNEESCKEEKKSRYARSPHRSSPSSPGGGRSNNSTQKDWAGDGKYGGSHSAYNGEEEEGMIPDEEGMIGRDDPIYQSVD* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02221 807 MobiDBLite consensus disorder prediction 1 15 - -
Rops5g02221 807 Gene3D - 146 377 IPR027417 -
Rops5g02221 807 CDD SF2_C_DEAD 387 516 - -
Rops5g02221 807 ProSitePatterns WW/rsp5/WWP domain signature. 27 53 IPR001202 GO:0005515
Rops5g02221 807 ProSiteProfiles WW/rsp5/WWP domain profile. 21 55 IPR001202 GO:0005515
Rops5g02221 807 SMART ww_5 22 55 IPR001202 GO:0005515
Rops5g02221 807 Gene3D - 378 548 IPR027417 -
Rops5g02221 807 MobiDBLite consensus disorder prediction 708 728 - -
Rops5g02221 807 SUPERFAMILY WW domain 14 54 IPR036020 GO:0005515
Rops5g02221 807 MobiDBLite consensus disorder prediction 96 135 - -
Rops5g02221 807 SMART helicmild6 427 507 IPR001650 -
Rops5g02221 807 Pfam DEAD/DEAH box helicase 192 362 IPR011545 GO:0003676|GO:0005524
Rops5g02221 807 MobiDBLite consensus disorder prediction 729 744 - -
Rops5g02221 807 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 546 - -
Rops5g02221 807 MobiDBLite consensus disorder prediction 50 148 - -
Rops5g02221 807 FunFam probable ATP-dependent RNA helicase DDX17 145 376 - -
Rops5g02221 807 SMART ultradead3 187 390 IPR014001 -
Rops5g02221 807 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 319 327 IPR000629 -
Rops5g02221 807 FunFam ATP-dependent RNA helicase RhlB 377 549 - -
Rops5g02221 807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 546 IPR001650 -
Rops5g02221 807 MobiDBLite consensus disorder prediction 746 767 - -
Rops5g02221 807 Pfam Helicase conserved C-terminal domain 399 507 IPR001650 -
Rops5g02221 807 MobiDBLite consensus disorder prediction 539 807 - -
Rops5g02221 807 MobiDBLite consensus disorder prediction 669 699 - -
Rops5g02221 807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 373 IPR014001 -
Rops5g02221 807 MobiDBLite consensus disorder prediction 613 651 - -
Rops5g02221 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 523 IPR027417 -
Rops5g02221 807 MobiDBLite consensus disorder prediction 50 82 - -
Rops5g02221 807 MobiDBLite consensus disorder prediction 1 30 - -
Rops5g02221 807 Gene3D - 13 60 - -
Rops5g02221 807 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 168 196 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02221 Rops-Chr5 48326293 48331724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02221 166 545 Eukaryotic Initiation Factors Gene Family AT3G19760 33.506 1.09e-65 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02221 K12823 - gmx:100816455 1147.5