Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02218 ATGGAGTTTGATCCTAGCATCCGAGGACAACCCCAATACTTTTCAAGCCTTTTCCCTGAAAATCCCATCTTAAAGCCAGAGATTCCGACCATGTTTCCTTCACAAAGCTCTGTTCTCATTCCCCCACCATCAAATAACCCCTTGTTGCATCACCCCAACTCTTTGTTCCACCATTTTCAGGACACTATCTTGAATGCCCCTAACCACAACCCTTCTCTTGTGATGGAGGGTTCTTCCTCCTCCATCACCAAACCTTTCTATGGAATCTCAACCCCTTCCTTGGGTGAGTCTTCCCAAGGTGGATCCCTCAAAGGTTTCATCAATGCTCATAACCCTCTCACTTTTGCACCAAACAACAAAATGGATGCTTTGCATGACAACCAAATTATATGGGATTTTTCGCAAAAAGCAGCAATTCAATCACCTTTAGCTTCTTTATCTCAGCCTCAAAAGGGTCCCTCACATTCTCTTGATGAATATGAATTGATGTTGAGGGCCAAGCTTGGAGAGGAACTCCCATGCATCACTGAAAATGATCACTGTAAAGACCCTGATCATGATGGTGATCAGAGGAAGAAGCACAAGAGGGAAAAGGTGCAAAAAGATATCATCAATGATATTAACATAATCAAAGGGATGTGGACACCTGAAGAAGACCGGGCTCTTGTGGAATTGGTGAAACAATATGGGCTGAAGAGATGGTCTCTAATTGCAAAATCATTGGAGGGCAGAGTTGGAAAGCAGTGTCGAGAGAGATGGCACAACCATCTCAGGCCAAACATTAGGGTTGCTTCCCTTTCCATTAAGGACTCATGGACCATAGAGGAAGACATGATACTGATCAAGTCCCACCAGGAACTTGGAAACAAATGGGCAGAGATTGCAAAGAGATTGCCAGGTAGGACTGAGAACACCATCAAGAACCATTGGAATGCCACTAAGAGACGCCAGACCTTCAATAACCAGAGAAACAAGCCTAACACCTATGAAGGATCATTACTTCATGCTTACATAAAAAAGGTCATTGCAACTGAAGAAGCTGAAAAAGAGCTAAAGAAAACCATTAGCAAGATGAAGATGAAGATGAAGATGAAGATGAAGAGTGGTTGTGATGATTTAGTTCATCTTCTGTTTCGATTTGGGTGCTCAAATGATGGTGGGCAACACCATGTCACCCCAACAAGGTCTTTGGTGAAGGAGAATGAGATGAAGAAGGAAATGGATCTGATAGAGATGATGAGTGCAAAATACTGA 1254 0.4298 MEFDPSIRGQPQYFSSLFPENPILKPEIPTMFPSQSSVLIPPPSNNPLLHHPNSLFHHFQDTILNAPNHNPSLVMEGSSSSITKPFYGISTPSLGESSQGGSLKGFINAHNPLTFAPNNKMDALHDNQIIWDFSQKAAIQSPLASLSQPQKGPSHSLDEYELMLRAKLGEELPCITENDHCKDPDHDGDQRKKHKREKVQKDIINDINIIKGMWTPEEDRALVELVKQYGLKRWSLIAKSLEGRVGKQCRERWHNHLRPNIRVASLSIKDSWTIEEDMILIKSHQELGNKWAEIAKRLPGRTENTIKNHWNATKRRQTFNNQRNKPNTYEGSLLHAYIKKVIATEEAEKELKKTISKMKMKMKMKMKSGCDDLVHLLFRFGCSNDGGQHHVTPTRSLVKENEMKKEMDLIEMMSAKY* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02218 417 CDD SANT 214 257 IPR001005 -
Rops5g02218 417 FunFam Transcriptional activator Myb isoform A 210 262 - -
Rops5g02218 417 Gene3D - 210 262 - -
Rops5g02218 417 SMART sant 268 316 IPR001005 -
Rops5g02218 417 SMART sant 210 259 IPR001005 -
Rops5g02218 417 CDD SANT 271 314 IPR001005 -
Rops5g02218 417 ProSiteProfiles Myb-like domain profile. 269 314 IPR001005 -
Rops5g02218 417 PANTHER MYB PROTEIN-RELATED 183 342 - -
Rops5g02218 417 Pfam Myb-like DNA-binding domain 269 311 IPR001005 -
Rops5g02218 417 Pfam Myb-like DNA-binding domain 211 257 IPR001005 -
Rops5g02218 417 Gene3D - 270 333 - -
Rops5g02218 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 269 318 IPR017930 -
Rops5g02218 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 261 IPR017930 -
Rops5g02218 417 SUPERFAMILY Homeodomain-like 208 310 IPR009057 -
Rops5g02218 417 MobiDBLite consensus disorder prediction 177 197 - -
Rops5g02218 417 ProSiteProfiles Myb-like domain profile. 206 257 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02218 Rops-Chr5 48248369 48251801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02218 209 341 MYB Transcription Factor Family AT4G18770 60.902 4.28e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g02218 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02218 K09422 - gmx:102668949 301.982