LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g02216	ATGGCCATTCTTCTTGCCTCAGGGCTATTCTTTCTGCTGCTCAATCTAGTCCAGTGGTTGCTTCATAGGGATTTGCTCGATAGTGGAGCTCTTGTTTGTGCTTCCACTAGTAGATACGACTGTCCTGGGAGCACTCCCCTTCATCTAGCTGCTAGAGGGGGATCTCTGGATTGTATTCGTGAATTGTTGGCATGGGGTGCGGATCGTCTTCATCGTGATGCATTTGGGCTGATACCATATGTGGTTGCTCTGAAACACAGACATGGAGCATCTGCGTCACTACTAAATCCTACATCTGTAGAGCCTCTTGTCTGGCCATCTCTATGGAAGTTCATTAGTGAACTTATTCCAGAGGCCAAAGCTTTATTAGTACAGGCCTCGATGGATGCAAACAAAGAAAGGGAGAAAAACGTATTAAAGGGGAGTGCTTATTCTCTTCCATCTCCATCACACCCTTTGGCAAAGTTGTACATGCTCATTCACGTAAATACGGTGAAGGTTTGTGCTGATACATGA	516	0.4574	MAILLASGLFFLLLNLVQWLLHRDLLDSGALVCASTSRYDCPGSTPLHLAARGGSLDCIRELLAWGADRLHRDAFGLIPYVVALKHRHGASASLLNPTSVEPLVWPSLWKFISELIPEAKALLVQASMDANKEREKNVLKGSAYSLPSPSHPLAKLYMLIHVNTVKVCADT*	172

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g02216	171	ProSiteProfiles	Ankyrin repeat profile.	42	74	IPR002110	GO:0005515
	Rops5g02216	171	ProSiteProfiles	Ankyrin repeat region circular profile.	42	68	-	-
	Rops5g02216	171	Pfam	Ankyrin repeats (many copies)	43	80	IPR002110	GO:0005515
	Rops5g02216	171	Gene3D	-	13	155	IPR036770	-
	Rops5g02216	171	SUPERFAMILY	Ankyrin repeat	25	96	IPR036770	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g02216	Rops-Chr5	48205766	48206370	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g02216	4	88	Ion Channels	AT2G26650	38.043	6.81e-06	43.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g02216	-		-	gmx:100786708	220.705

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