Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02202 ATGGCCTCTTCTAGCTACTCAAATTCTCCCTGTGCTGCTTGCAAGTTTTTGAGAAGGAAATGCATGCCAGATTGTGTTTTTGCCCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGCAATGTGAGCAAGATCCTCAATGAAGTCCTACCCCATCAAAGGGAGGATGCAGTCAACTCTCTGGCCTATGAAGCTGAAGCAAGGATAAAAGATCCAGTTTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTTATTAGGCTCCAAAAGGAACTAGATGCCACAAATGCTGATTTGATCCGCTATACTTGCAATGAAATGTCAACTCAAGGTGGGAGAAGGATGAGTGAAGGAGGAGGAGGAGGAGGAGGGGGTTCCTCTATTGGACACTCTTCTGGTTTTTACTATCCTTCTAATTGGAACAATGATCCTTGTGGGGATGGCTACAATAGAGGTGATAGCACTATGTGA 504 0.4464 MASSSYSNSPCAACKFLRRKCMPDCVFAPYFPPEEPQKFANVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMSTQGGRRMSEGGGGGGGGSSIGHSSGFYYPSNWNNDPCGDGYNRGDSTM* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02202 167 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Rops5g02202 167 Coils Coil 89 109 - -
Rops5g02202 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 117 - -
Rops5g02202 167 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02202 Rops-Chr5 48005329 48005832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02202 4 125 AS2 family AT3G27650 80.952 2.46e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops5g02202 LOB 3.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02202 - - gmx:100306630 286.574