Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02191 ATGGAATCACCCGTTGACGATCATGTGGTTGGTGGCGGAGAACCCAACGATGTCGTTAGACCCTTTTCCCACAGAGAAGAACACGAGGAACAACACCACAACTCACAACCTCTCACCGGCGATGGTGCCAGTCCAGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACGGATTCTGTTATCATGAAGGACAGGAAAACTGGGCAACCTCGTGGATTCGGGTTTATAACCTATGCAGATCCCTCTGTGGTTGATAAAGTCATTGAGGACACTCATATCATCAATGGCAAACAAGTTGAAATTAAGCGGACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAAGACAAAGAAAATTTTTGTAGGCGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGCGACTTCTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCCACAAATCGATCTCGTGGCTTTGGGTTTATCACCTTTGACTCTGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCACCTCCATCATCCAAGCGCTATAATGACTCAAGGTCTTCATATGGCGGTGGATATGGAGAAGCTTATGATGGATTTGGTGGCAGCTTTGGTGTTGGGGGTGGTTACAGGTCAGGTGGTGTCTATGGTGGTGGAAGGGGTGGTGCTTATGGTGGGTATGGTAGTGAATTTGGTGGGTATGGAGGATATGCTGGAGCAATGGGGCCATACAGAGGAGATCCTTCGCTTGGGTTTGCTGGTCGTTATGGTGGAGGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGTGGAACCAGTGAGAATTATGGGGCATATGGTGGTGGTGGTGGTGCTGCTGCTGCTGGTGGGGGTTCTTCTGGCGGTGGTGCCTATCAAAGTGGCTATGATGCCAGCTTAGGGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGGAGTAGAGGAGGATATGGTGCTGGTCGATATCATCCTTATGGAAGATAG 1137 0.4776 MESPVDDHVVGGGEPNDVVRPFSHREEHEEQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFSDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNPPPPSSKRYNDSRSSYGGGYGEAYDGFGGSFGVGGGYRSGGVYGGGRGGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGGFSRGYDLGGYGGTSENYGAYGGGGGAAAAGGGSSGGGAYQSGYDASLGGGYGGASGGSFYGSRGGYGAGRYHPYGR* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02191 378 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 378 - -
Rops5g02191 378 FunFam Heterogeneous nuclear ribonucleoprotein 1 127 247 - -
Rops5g02191 378 Gene3D - 130 247 IPR012677 -
Rops5g02191 378 MobiDBLite consensus disorder prediction 1 47 - -
Rops5g02191 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 115 IPR000504 GO:0003723
Rops5g02191 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 204 IPR000504 GO:0003723
Rops5g02191 378 MobiDBLite consensus disorder prediction 206 230 - -
Rops5g02191 378 SUPERFAMILY RNA-binding domain, RBD 39 124 IPR035979 GO:0003676
Rops5g02191 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 122 IPR000504 GO:0003723
Rops5g02191 378 SMART rrm1_1 47 118 IPR000504 GO:0003723
Rops5g02191 378 SMART rrm1_1 135 208 IPR000504 GO:0003723
Rops5g02191 378 FunFam Heterogeneous nuclear ribonucleoprotein 1 45 126 - -
Rops5g02191 378 MobiDBLite consensus disorder prediction 19 35 - -
Rops5g02191 378 SUPERFAMILY RNA-binding domain, RBD 123 223 IPR035979 GO:0003676
Rops5g02191 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Rops5g02191 378 Gene3D - 19 129 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02191 Rops-Chr5 47829737 47833119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02191 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 25.568 1.23e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02191 K12741 - gmx:100793209 493.041