Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02181 ATGTTGTTGAACAATCAAGTTATATTTACAACTGATCCAACGTCTGGTAGGTTTTCAGAGTATTGCACCGTTGCTGCAAGGCCTGAGGATGCAGCTGTTAATGTGCCAAGTTCTGGTGAGGTTGCTATAAGACCTCCATTTTATGGTCCAGCCCCAGGGTCCATGGTTGGTCCAAGCTACCCAAGACCTACACCCGTATGGTGTGTGCCTATGCCACCACCTAGCTCCATTAGGGGACCCCATCATCGGAACTTGGTTCCATATCCTGCCAACCCAGCACCTCAGCCACACCTCCCACATTGCTGTCGAGTTTGTTGGGTTCGTGATCAAGATTGGCAGTATCCGGTTCTGTCAAATGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAGAGTAGAACCCAAATCATGTTTGAGACTTTTAATACCCCAGCTATATACGTAACGATTCATGCTGTTCTCGCGCTGCATGCGAGTGGTCGTACAACTGGTATTGTGATTAATTCCGGTGATGGGGTCAGTCTCACTGTCCCAACCTATAAGGGTTATGCCCTCCCACATGCCATCCTTCGTCTTGGTTTGGCTGGTCGTGACCTCACTGATTTCTTAATGAAATTATGA 618 0.4838 MLLNNQVIFTTDPTSGRFSEYCTVAARPEDAAVNVPSSGEVAIRPPFYGPAPGSMVGPSYPRPTPVWCVPMPPPSSIRGPHHRNLVPYPANPAPQPHLPHCCRVCWVRDQDWQYPVLSNEAPLNPKANRESRTQIMFETFNTPAIYVTIHAVLALHASGRTTGIVINSGDGVSLTVPTYKGYALPHAILRLGLAGRDLTDFLMKL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02181 205 PRINTS Actin signature 153 172 IPR004000 -
Rops5g02181 205 PRINTS Actin signature 128 141 IPR004000 -
Rops5g02181 205 Pfam Actin 111 204 IPR004000 -
Rops5g02181 205 CDD NBD_sugar-kinase_HSP70_actin 115 194 - -
Rops5g02181 205 Gene3D Actin; Chain A, domain 4 193 205 - -
Rops5g02181 205 Gene3D - 111 150 - -
Rops5g02181 205 PANTHER ACTIN 113 205 IPR004000 -
Rops5g02181 205 Gene3D - 151 192 - -
Rops5g02181 205 SUPERFAMILY Actin-like ATPase domain 159 205 IPR043129 -
Rops5g02181 205 SUPERFAMILY Actin-like ATPase domain 111 166 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02181 Rops-Chr5 47518378 47519264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02181 113 205 Cytoskeleton Gene Families AT3G12110 79.570 1.46e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02181 K05692 K10355 gmx:100792119 153.295