Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02179 ATGACCATGCCCGGCTATGCAGCAATAATTGCAGCACTCCTCTGCTTCCTATACATCTTCCATAGGAGAAGATGTTGCAAATACCCCCTCTTGATAGACTATCCTATCCTTGGCATGTTACCACCAGTTCTTTGGAACTTGTGGCGGATTCATGATTTCATAACTGACGTGCTCAAACGACATGGAGGCACTGGAGAGTTCATGGGACCTTGGTTCACCAATATGAACTATATGGTCACCATTGACCCCATCAACGTGCATCACATCATGAGCAAGAGTTTTGACAACTACATCAAAGGCCCCGAGTTTCATGAGATATTTCAAGCTTTCGGGGATGGGATATTCACATCTGATTCAGAAGCATGGAAATACAACAGGTCTCTATTCCATTCTTTGTTTAAACAAAGAAGCTTTGAGGAACTTCAAGAGAAAATTGTTTACAAGAAGGTGGAGAGTAGCCTACTTCCTATATTGGATCATGTGCAACAACAAGGAACGGTGGTGGATCTACAAGATGTCTTCAATCGGTTCACATTTGATAACATATGCTCCATAATTTTGGGACATGATCCTAATTGTCTCTCACTTGACTTACCAGAAGTTGCATGTGAGAGGGCTTTTACCGAAGCAATGGAGTGCATATTCTATAGACACAAAGTGCCAAAAAGTGTTTGGAAGTTGCAAAAATGGTTTAATATTGGTGAAGAGAGGAAGATGACCAAAGCGTGCAAGGCATTTGACCAATACCTCTATTCATGTCTAGAGTCTAAGAAAAAAGAGCTAACCAAGTACAACAAAAATGAAATGGCTGATGACTTGCTAACAACTTTGATGATGAGAGAAGAAAAGGGACAAGTGCATAATGACAAGTTTTTAAGAGACGCAGCATTCAATCTTTTGGTAGCAGGGAGAGATACCATAACTTCAGCACTCACGTGGTTCTTTTGGCTTGTTGCTACAAACCCTTCAGTGGAAGCCAAGATTCTTGAAGAGATCAAAGACAATTTTGGGGCCAATGACATGGAACTTGGACTTTTAGGCATGGAAGAGGTGAAGAAGCTAATTTATCTGCATGGTGCTATATGTGAAGCTCTGAGGCTTTTTCCTCCTATACCTTTTGAGCGCAAGCAAGCAATCAAAGCTGACATACTTCCCAGTGGTCACCATATTAATCCTAATACAATGATAGTATTTTCTTTGTATGCTATAGGGAGAAATGAAGATATATGGGGAAAAGATTGTTTAGAGTTCAAACCAGAGAGATGGATCTCTGAGAGGGGAGGTATTGTTTATGCTCCATCTTACAAGTTTGTTAGTTTTAATGCAGGGCCAAGGACTTGTTTTGGAAAAGACTTGTCCTTCATTCAAATGAAGATGGTGGCAACTGCTATTTTGTGCAACTATCATATCAGAGTGGTGGAAGATCATCTTGCTACCCCGAGCCATTCAATTATACTTCTTATGAAGCATGGCTTGAAGGAGACATTTCTCTTTTGTTGCAACTCTGATATTCATCTTTTTTTTCTTTCTGGTTCAGCCACCATGGCCAATTCTTCAATGTTTGATGATTCCAATCCCTTTTATCTTCATCCTTCAAACAATCCAGGTCTGATACTTGTTTCTCAACAATTCAATGGAGATAACTACTGTTCTTGGAGTCGTGCCATGAAAATGGCTCTTCTTGCCAAGAACAAATATGGTTTTGTGGATGGTTCTCTCCCTCAACCTGATGTTGCTGATGAACAAAGGTTCTTGGCATGGCAGCGCAACAACAACATTGTAAGTTCTTGGCTCCTTAATTCAGTCTCCAAAGACATCTCTACAAGTGTCTTGTATTCCAACACAGCAGCTGATATCTGGAATGACCTTAAAGAAAGGTTTCAGCAACAAAATGGACCACAAATTTTCTAA 1911 0.4029 MTMPGYAAIIAALLCFLYIFHRRRCCKYPLLIDYPILGMLPPVLWNLWRIHDFITDVLKRHGGTGEFMGPWFTNMNYMVTIDPINVHHIMSKSFDNYIKGPEFHEIFQAFGDGIFTSDSEAWKYNRSLFHSLFKQRSFEELQEKIVYKKVESSLLPILDHVQQQGTVVDLQDVFNRFTFDNICSIILGHDPNCLSLDLPEVACERAFTEAMECIFYRHKVPKSVWKLQKWFNIGEERKMTKACKAFDQYLYSCLESKKKELTKYNKNEMADDLLTTLMMREEKGQVHNDKFLRDAAFNLLVAGRDTITSALTWFFWLVATNPSVEAKILEEIKDNFGANDMELGLLGMEEVKKLIYLHGAICEALRLFPPIPFERKQAIKADILPSGHHINPNTMIVFSLYAIGRNEDIWGKDCLEFKPERWISERGGIVYAPSYKFVSFNAGPRTCFGKDLSFIQMKMVATAILCNYHIRVVEDHLATPSHSIILLMKHGLKETFLFCCNSDIHLFFLSGSATMANSSMFDDSNPFYLHPSNNPGLILVSQQFNGDNYCSWSRAMKMALLAKNKYGFVDGSLPQPDVADEQRFLAWQRNNNIVSSWLLNSVSKDISTSVLYSNTAADIWNDLKERFQQQNGPQIF* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02179 636 CDD CYP86A 66 492 - -
Rops5g02179 636 Gene3D Cytochrome P450 20 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 SUPERFAMILY Cytochrome P450 18 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 PANTHER CYTOCHROME P450 23 492 - -
Rops5g02179 636 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Rops5g02179 636 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 Pfam Cytochrome P450 42 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops5g02179 636 Pfam gag-polypeptide of LTR copia-type 530 577 IPR029472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02179 Rops-Chr5 47361836 47366342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02179 12 495 Cytochrome P450 AT2G23180 45.674 5.27e-159 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02179 - - aprc:113867564 774.237