Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g02161 ATGGCTAGGAGCTGGCTTATGGACATTGGAGGATTTGCAAAGAAAGTGAAAAATACTAATCTGTCAACAGCTGATCAAATCAAGGACTGTGGAGCATATCATGAATGCCCAAAATGTCATTATCATATTGATAACAGTGATGTTTCTCCTGATTGGCCTGGCTTTCCTACTGGTGTAAAGTTTGATCCTTCTGATGTTGAACTTTTAGAACATTTAGCAGCAAAGTGTGGTATTGGCAACAGAGAGCCACACATGTTTATCCATGAGTTCATCCCAACTCTAGAAGGGGACCAAGGCATATGCTACACACATCCAAAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTAGTGTCCATTTCTTTCACAGGACAGTTAATGCATATGCTACTGGACAAAGAAAGCGCCGAAAGATTCACCATCAACATGGTTTGACCGAGGAGCATGTACGCTGGCACAAGACTGGTAAGACCAAAGCTATAATAGAAAATGGAGTCCATAAGGGATTTAAGAAGATCATGGTTCTTTATGTAAGATCTGAAAAGGGATCCAAGTCATATAAATCCAATTGGGTGATGCATCAGTACCATCTAGGAAATGAAGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAAATTTCTTATCAGCAGCAGAAGCAGACTGAGAAAAATGAGGAGAATCCAGTGGTTGAAGATTATAACATGGCATCACGAGCAAGTCCAAGAACCCCAAAACCAAATCCCCCAAGTCGACCTTGTATTGGCAAATGTGTTGACTGTGATGACAATTTTGATGAAAATGAACTTCCATCACTCATCCAGGATGCCAAGCCTATTCCTGGAGAATCTCATGCCCCACCATCTGATGTTCAAGAAGAGGATAATAGGGGCAACCCTGCATGGTTGGCTGGTGAATCACAAGCTGTGTGTGACTTTGATGGCTTGGATGATATCTTATTATGCAAGGAGATGTTAGATTCTTCTGCTCTCTTAAATGATTCTGGATTGAACTCTTCCACTTTTAACAGCTTTGCTTGCAATGAAAATGAGGCATCTTATGGAATTTCTGTCCTGGACACCCTGGAATTGGATACCCCTCCAGATTTTGATCTTTCTAATTTGCAATTTTGTTCTCAAGACAGTAGTATCCTTCAGTGGATGGACAGGTTATAA 1173 0.4084 MARSWLMDIGGFAKKVKNTNLSTADQIKDCGAYHECPKCHYHIDNSDVSPDWPGFPTGVKFDPSDVELLEHLAAKCGIGNREPHMFIHEFIPTLEGDQGICYTHPKNLPGAKKDGSSVHFFHRTVNAYATGQRKRRKIHHQHGLTEEHVRWHKTGKTKAIIENGVHKGFKKIMVLYVRSEKGSKSYKSNWVMHQYHLGNEEDEKDGEYVVSKISYQQQKQTEKNEENPVVEDYNMASRASPRTPKPNPPSRPCIGKCVDCDDNFDENELPSLIQDAKPIPGESHAPPSDVQEEDNRGNPAWLAGESQAVCDFDGLDDILLCKEMLDSSALLNDSGLNSSTFNSFACNENEASYGISVLDTLELDTPPDFDLSNLQFCSQDSSILQWMDRL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g02161 390 Gene3D NAC domain 64 222 IPR036093 GO:0003677|GO:0006355
Rops5g02161 390 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Rops5g02161 390 MobiDBLite consensus disorder prediction 274 299 - -
Rops5g02161 390 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 310 IPR044799 GO:0003700
Rops5g02161 390 SUPERFAMILY NAC domain 39 216 IPR036093 GO:0003677|GO:0006355
Rops5g02161 390 MobiDBLite consensus disorder prediction 215 252 - -
Rops5g02161 390 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Rops5g02161 390 FunFam NAC domain-containing protein 8 64 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g02161 Rops-Chr5 46852323 46855719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g02161 36 218 NAC Transcription Factor Family AT1G28470 55.319 8.03e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g02161 NAM 2.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g02161 - - gmx:100780662 644.425